PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | HL.SW.v1.0.G004741.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 268aa MW: 28937.3 Da PI: 6.9029 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.7 | 4.5e-39 | 59 | 160 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C aCk+lrrkC+++C++ap+f ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ ++ yeA+ar+ dPvyG+v++il+lqqq++ HL.SW.v1.0.G004741.1 59 PCGACKFLRRKCVSGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHIPVNRRHDAVVTISYEAQARLADPVYGCVSTILALQQQVA 147 7***********************9989************************************************************* PP DUF260 89 qlkaelallkeel 101 +l++ela+++++l HL.SW.v1.0.G004741.1 148 SLQSELAMVQTQL 160 ********99885 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.763 | 58 | 160 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.7E-39 | 59 | 157 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:1900150 | Biological Process | regulation of defense response to fungus |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 268 aa Download sequence Send to blast |
MSDHISPTTR VLDSRRKSTT KRATATSTST SSALLLQPDH ELGEAAAAAP LTTAAPPAPC 60 GACKFLRRKC VSGCIFAPHF GSDQGAARFA AVHKVFGASN VSKLLLHIPV NRRHDAVVTI 120 SYEAQARLAD PVYGCVSTIL ALQQQVASLQ SELAMVQTQL MNSRFAFANV VHSSQHEQQQ 180 QQQQQQMQQH NVAVLQPAYS NNSSTSNNLI NITSFTSNFD LATAATTTLS SQSLEPLQLS 240 RPSNDDDEDE EESQIPHVFP TEMLHRG* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-38 | 48 | 166 | 1 | 115 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-38 | 48 | 166 | 1 | 115 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002525698.1 | 1e-104 | LOB domain-containing protein 20 | ||||
Swissprot | Q9SRV3 | 1e-79 | LBD20_ARATH; LOB domain-containing protein 20 | ||||
TrEMBL | A0A1Q3D8G0 | 1e-104 | A0A1Q3D8G0_CEPFO; DUF260 domain-containing protein (Fragment) | ||||
STRING | XP_002525698.1 | 1e-104 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7715 | 31 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G03760.1 | 2e-54 | LOB domain-containing protein 20 |