PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G004423.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family G2-like
Protein Properties Length: 363aa    MW: 40825.8 Da    PI: 6.8369
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G004423.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like77.91.2e-24104157155
               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                           k+r++W+ +LH++Fv+av+q+ G +k  Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  HL.SW.v1.0.G004423.1 104 KARVVWSVDLHQKFVKAVNQI-GFDKVGPKKILDLMNVPWLTRENVASHLQKYRL 157
                           68*******************.9*******************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011014.532139IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23001.7E-10156No hitNo description
SuperFamilySSF521721.42E-6268IPR011006CheY-like superfamily
SuperFamilySSF466891.16E-17102161IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.3E-28102162IPR009057Homeodomain-like
TIGRFAMsTIGR015578.9E-22104157IPR006447Myb domain, plants
PfamPF002499.3E-8106156IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MSVDGETSRV MKGVQHGACD YLLKPIRMKE LKNIWQHVFR KKIHEIRDIE SHESIESIMT  60
RNASDHSDDG HLLSMEDFTS VKKRKEIDKQ HDEKDYGDSS SAKKARVVWS VDLHQKFVKA  120
VNQIGFDKVG PKKILDLMNV PWLTRENVAS HLQKYRLYLS RLQKEKESDG KTSFGGLNHT  180
DIPLKDPPVS FGLQSSTSVH QNDVLNGSYR ICGSNLLLQN VDSSSHEDDL RSIVSEPVVE  240
AKAPAVNLPD SQKNKSSQMS FNHSFAPLES EVNFAAFEPG IPVKYSWGEV SEIQFGQEHK  300
PLIHLENGFT KLPLPDSLHQ VHVEPVQSNS SISSKPSSAE KASRGPVESK APYPEYESHE  360
VSH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-17100162163ARR10-B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010100306.11e-180two-component response regulator ARR11
TrEMBLA0A2P5F0W50.0A0A2P5F0W5_TREOI; Two-component response regulator
STRINGXP_010100306.11e-180(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39993360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.14e-71response regulator 11