PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G004372.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | HB-other | ||||||||
Protein Properties | Length: 370aa MW: 40813.7 Da PI: 6.999 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 20.7 | 7.1e-07 | 13 | 74 | 6 | 55 |
S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55 +ft+ ++ e+e+ ++ n+ p +e LA+k ++ +qV +WFqNrR+ HL.SW.v1.0.G004372.1 13 RFTPIEVAEMEAILQEhnNSMPGREVLVGLAEKFsdsadrkgkiTVQMKQVWNWFQNRRYAI 74 58888999999999965589999999999999999999999999999************865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.55E-12 | 4 | 76 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 0.0077 | 7 | 81 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 9.572 | 13 | 77 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.7E-7 | 13 | 79 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 7.31E-5 | 13 | 75 | No hit | No description |
Pfam | PF00046 | 1.7E-4 | 13 | 74 | IPR001356 | Homeobox domain |
Pfam | PF16719 | 1.9E-34 | 125 | 246 | IPR032001 | SAWADEE domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003682 | Molecular Function | chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 370 aa Download sequence Send to blast |
MGRPPSNGGP AFRFTPIEVA EMEAILQEHN NSMPGREVLV GLAEKFSDSA DRKGKITVQM 60 KQVWNWFQNR RYAIRAKLSR TPGKLNVSSM PREDPMPVRN MPQSLTAPIP TPSGAGRGTS 120 ENSVMEFEAK SGRDGAWYDV ANFFSHRYLD SGDPEVLIRF AGFGPEEDEW VNVKKHVRQR 180 SLPCESSECV AILPGDLILC FQEGKEQALY LDAQRRRHDV RGCRCRFLVR YDHDQSEEIV 240 PLRKVCRRPE TDYRLQQLHA VNEAASAEQH KSNMDSFAVN SLRASVPTLE TPQKQHHTTD 300 ATSVTPVALA NTSFATQASS VLEPKKAETS NAVDAGNSNT VPSGGNSVAS VSLISNNTVI 360 SDDNMAEGK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4iup_A | 3e-41 | 125 | 250 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iup_B | 3e-41 | 125 | 250 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015899221.1 | 0.0 | protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1 | ||||
Swissprot | Q8RWJ7 | 1e-145 | SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2 | ||||
TrEMBL | A0A2P5F4T9 | 0.0 | A0A2P5F4T9_TREOI; Octamer-binding transcription factor | ||||
STRING | XP_010098455.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6816 | 31 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18380.1 | 1e-134 | sequence-specific DNA binding transcription factors;sequence-specific DNA binding |