PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G004319.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family HD-ZIP
Protein Properties Length: 325aa    MW: 36333.6 Da    PI: 8.4947
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G004319.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox35.31.9e-111862142856
                           HHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox  28 eereeLAkklgLterqVkvWFqNrRakek 56 
                           +++  LAk+l+L  rqV vWFqNrRa+ k
  HL.SW.v1.0.G004319.1 186 KQKLALAKQLNLRPRQVEVWFQNRRARTK 214
                           57789**********************98 PP
2HD-ZIP_I/II104.77.2e-34146249191
           HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLep..............erKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalke 75 
                           +kk+rl+keq+ +LEe+F+e+++L+p              ++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+e
  HL.SW.v1.0.G004319.1 146 RKKLRLTKEQSLVLEETFKEHNTLNPdsleikpkdlwrvqKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTE 234
                           69**********************984444444444444458999******************************************** PP

           HD-ZIP_I/II  76 enerLekeveeLreel 91 
                           en+rL+kev+eLr +l
  HL.SW.v1.0.G004319.1 235 ENRRLQKEVQELR-TL 249
                           ************9.44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046186.6E-331117IPR006712HD-ZIP protein, N-terminal
SuperFamilySSF466891.88E-13134217IPR009057Homeodomain-like
PROSITE profilePS5007114.852142216IPR001356Homeobox domain
SMARTSM003891.4E-10144220IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-14146219IPR009057Homeodomain-like
CDDcd000869.90E-11146217No hitNo description
PfamPF000467.1E-9186214IPR001356Homeobox domain
PROSITE patternPS000270191214IPR017970Homeobox, conserved site
PfamPF021836.9E-11216249IPR003106Leucine zipper, homeobox-associated
SMARTSM003402.6E-26216259IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MGENDDGLGL SLSLGCGATQ PSVKLNLMQK PSPPMQYHHH HHHHRQKTPW NEIFQLSNDR  60
NSDSRSFLRG LDVNRAPDSA TSATAATAAA ADYEDENGVS SPNSTVSSIS GKRSERELIG  120
EEIENERDSC SRGSDDEDGG GGDNSRKKLR LTKEQSLVLE ETFKEHNTLN PDSLEIKPKD  180
LWRVQKQKLA LAKQLNLRPR QVEVWFQNRR ARTKLKQTEV DCEYLKRCCE NLTEENRRLQ  240
KEVQELRTLK LSPQLYMHMS PPTTLTMCPS CERVAVTSSS SSTAASSAPN RPHAIPGVSR  300
PVPINRWAAL PIQHRPKDAQ VSRS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144150SRKKLRL
2208216RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2297208e-87KP229720.1 UNVERIFIED: Boehmeria nivea Homeobox-leucine zipper protein-like (HDZIP21) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022756941.11e-141homeobox-leucine zipper protein HAT3
SwissprotP466021e-103HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLA0A2P5CIJ51e-165A0A2P5CIJ5_PARAD; Octamer-binding transcription factor
STRINGXP_006464444.11e-136(Citrus sinensis)
STRINGXP_006445396.11e-136(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123934105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.12e-67homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]