PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G004230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | LBD | ||||||||
Protein Properties | Length: 232aa MW: 23988.5 Da PI: 4.5808 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 34 | 8.5e-11 | 56 | 102 | 54 | 100 |
DUF260 54 redamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 + +++sl+yeA+ r+ +Pv+G++g++++++++l+++++e++l++e+ HL.SW.v1.0.G004230.1 56 VDLIFKSLLYEACGRIVNPVSGSTGLVQSGSWHLCEAAVEAVLRGEP 102 56789***********************************9988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03195 | 2.4E-6 | 56 | 96 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MAVESSDEAA PRAAPSDPAS TGSNPPNPNP TPLSSSPNST AAPDSSTSSM PAPSTVDLIF 60 KSLLYEACGR IVNPVSGSTG LVQSGSWHLC EAAVEAVLRG EPITPVSAEL APGSASVSGD 120 IRHAAKREGS VIRKVQSRRR LKRKVAKVEV QSETEFGTES AQLVLSGPPV SHDSEGTRQL 180 LSPGADSGEE DSGSVALAVK PKLGGVELEL TLGWAMWTFD KSERSEEEDA N* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 137 | 143 | RRRLKRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015882967.1 | 1e-36 | LOB domain-containing protein 40-like | ||||
TrEMBL | A0A2P5F9N5 | 2e-65 | A0A2P5F9N5_TREOI; Lateral organ boundaries domain containing protein | ||||
STRING | EOY21024 | 1e-35 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF25395 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67100.1 | 4e-26 | LOB domain-containing protein 40 |