PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G004223.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 170aa MW: 18228.6 Da PI: 7.751 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 87 | 2e-27 | 6 | 68 | 4 | 58 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegt........aaalkCaACgCHRnFHRreve 58 +rYkeC++NhA+s+G havDGC+Efm+ g +a+ CaACgCHRnFHR+e HL.SW.v1.0.G004223.1 6 IRYKECKRNHAISVGLHAVDGCREFMTPAAGAGGggeqgggdESAFLCAACGCHRNFHRKEIM 68 79************************86443322345666669*****************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 3.0E-12 | 1 | 67 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 7.8E-25 | 6 | 67 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.9E-20 | 7 | 67 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 21.373 | 8 | 66 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MTSVIIRYKE CKRNHAISVG LHAVDGCREF MTPAAGAGGG GEQGGGDESA FLCAACGCHR 60 NFHRKEIMKD GVVVHYGSSS TIVAPRLAAA PWPSSVVPMY VVVHQPAAVV QPPPADGLSS 120 YHHHQHHPHH LHHHGLLQHG SSGADWDNGE FEQKPNISIK TTNIKKEPF* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1550 | 34 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28917.1 | 1e-17 | mini zinc finger 2 |