PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G004100.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

HD-ZIP

Protein Properties

Length: 734aa MW: 80302.9 Da PI: 5.792

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G004100.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62	9.1e-20	63	118	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r++ +++t+ q++e+e++F+++++p+ ++r+eL+++lgL+ qVk+WFqN+R+++k HL.SW.v1.0.G004100.1 63 RKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 118 789999***********************************************998 PP
2	START	54.3	4.3e-18	253	374	1	98
HHHHHHHHHHHHHHHHC-TT-EEEE..........EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-T CS START 1 elaeeaaqelvkkalaeepgWvkss..........esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWde 74 ela +a++el+++a+a++p+Wv e++n+de+l++f+++ + ++ea+r+++vv+m++++lve+l+d++ qW++ HL.SW.v1.0.G004100.1 253 ELAVAAMEELIRMAQAGDPLWVPADnsnvtstattEILNEDEYLRTFPRGIGpkplgMKSEASRETTVVIMNHTNLVEILMDVS-QWST 340 57899***************98888999***************999****************************. PP T-S....EEEEEEEECTT......EEEEEEEEXX CS START 75 tla....kaetlevissg......galqlmvael 98 + +a tl+ +s+g galq+ ++++ HL.SW.v1.0.G004100.1 341 IFCgivsRALTLDILSTGvagnynGALQVLSSKY 374 99999***********9999999999988876 PP
3	START	43.9	6.3e-15	422	464	164	206
EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 v+wvehv++++r +h+++++lv+sg+a+gak+wvatl+rqce+ HL.SW.v1.0.G004100.1 422 VIWVEHVEVDDRAVHNIYKPLVNSGIAFGAKRWVATLDRQCER 464 9****************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.9E-22	48	118	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.22E-19	49	120	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.086	60	120	IPR001356	Homeobox domain
SMART	SM00389	8.7E-19	61	124	IPR001356	Homeobox domain
CDD	cd00086	6.97E-19	62	121	No hit	No description
Pfam	PF00046	2.1E-17	63	118	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	95	118	IPR017970	Homeobox, conserved site
SuperFamily	SSF55961	2.83E-11	244	466	No hit	No description
PROSITE profile	PS50848	17.596	244	467	IPR002913	START domain
CDD	cd08875	2.06E-68	248	463	No hit	No description
SMART	SM00234	4.5E-25	253	464	IPR002913	START domain
Pfam	PF01852	4.4E-11	254	374	IPR002913	START domain
Pfam	PF01852	4.6E-10	422	464	IPR002913	START domain
SuperFamily	SSF55961	2.35E-25	484	724	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 734 aa Download sequence Send to blast
MFQPNMFETV HHHLADISHK STSESDQLGK MRDDDLELDT KSGTEIMEAP SGDELDPTQR 60 SKRKRYHRHT QRQIQEMEAF FKECPHPDDK QRKELSRELG LEPLQVKFWF QNKRTQMKAQ 120 HERHENSILK AENDKLRAEN NRYKEALSNA TCPNCGGPAA LGEMSFDEQH LRIENARLRE 180 EIDRISGIAA KYAGKPLSSF SHLSSHVSRS LDISGVGNFG SQSGFVGEMF GATGDLLRSV 240 SVPTEADKPI IVELAVAAME ELIRMAQAGD PLWVPADNSN VTSTATTEIL NEDEYLRTFP 300 RGIGPKPLGM KSEASRETTV VIMNHTNLVE ILMDVSQWST IFCGIVSRAL TLDILSTGVA 360 GNYNGALQVL SSKYPHHWFQ PERITSLGTV NNMVTELGQW LMFPWTIYVQ VPFRGAEEGH 420 LVIWVEHVEV DDRAVHNIYK PLVNSGIAFG AKRWVATLDR QCERLASSMA SNIPAGDLCV 480 ITSPDGRKSM LKLAERMVMS FCVGVGASTA HAWTTLSATG SDDVRVMTRK SMDDPGRPPG 540 IVLSAATSFW LPVPPKRVFD FLRDENSRSE WDILSNGGLV QEMAHIANGR DPGNCVSLLR 600 VNSANSSQSN MLILQESCTD STGSYVIYAP VDIVAMNVVL SGGDPDYVAL LPSGFAILPD 660 GAANNSGHIN TTGPTGGIVD VGSGGSLLTV AFQILVDSVP TAKLSLGSVA TVNNLIKCTV 720 ERIRAAVTSE NVQ*

Sequence ? help Back to Top

Protein Sequence Length: 734 aa Download sequence Send to blast

MFQPNMFETV HHHLADISHK STSESDQLGK MRDDDLELDT KSGTEIMEAP SGDELDPTQR  60
SKRKRYHRHT QRQIQEMEAF FKECPHPDDK QRKELSRELG LEPLQVKFWF QNKRTQMKAQ  120
HERHENSILK AENDKLRAEN NRYKEALSNA TCPNCGGPAA LGEMSFDEQH LRIENARLRE  180
EIDRISGIAA KYAGKPLSSF SHLSSHVSRS LDISGVGNFG SQSGFVGEMF GATGDLLRSV  240
SVPTEADKPI IVELAVAAME ELIRMAQAGD PLWVPADNSN VTSTATTEIL NEDEYLRTFP  300
RGIGPKPLGM KSEASRETTV VIMNHTNLVE ILMDVSQWST IFCGIVSRAL TLDILSTGVA  360
GNYNGALQVL SSKYPHHWFQ PERITSLGTV NNMVTELGQW LMFPWTIYVQ VPFRGAEEGH  420
LVIWVEHVEV DDRAVHNIYK PLVNSGIAFG AKRWVATLDR QCERLASSMA SNIPAGDLCV  480
ITSPDGRKSM LKLAERMVMS FCVGVGASTA HAWTTLSATG SDDVRVMTRK SMDDPGRPPG  540
IVLSAATSFW LPVPPKRVFD FLRDENSRSE WDILSNGGLV QEMAHIANGR DPGNCVSLLR  600
VNSANSSQSN MLILQESCTD STGSYVIYAP VDIVAMNVVL SGGDPDYVAL LPSGFAILPD  660
GAANNSGHIN TTGPTGGIVD VGSGGSLLTV AFQILVDSVP TAKLSLGSVA TVNNLIKCTV  720
ERIRAAVTSE NVQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269\|PubMed:12505995}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024024692.1	0.0	homeobox-leucine zipper protein MERISTEM L1 isoform X1
Swissprot	Q93V99	0.0	PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBL	A0A2P5B1K0	0.0	A0A2P5B1K0_TREOI; Octamer-binding transcription factor
STRING	XP_010101468.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1508	34	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04890.1	0.0	protodermal factor 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]