PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G003849.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | LBD | ||||||||
Protein Properties | Length: 240aa MW: 26200.8 Da PI: 8.3992 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 89.6 | 4e-28 | 4 | 108 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 +C++C+vlr++C++dC+++p++ p++q++++ +++k++G++ +l+l++a p+ r+++++sl+yeA+ r+ P++G+vg+++++ HL.SW.v1.0.G003849.1 4 SCNGCRVLRKGCSDDCAIRPCLqwiksPDSQAQATLFLAKFYGRTGLLNLINAGPQYLRPAVFKSLLYEACGRIVSPINGSVGLLWTGD 92 6**************************************************************************************** PP DUF260 85 qqleqlkaelallkee 100 ++ +q+++e++l++++ HL.SW.v1.0.G003849.1 93 WDKCQAAVEAVLAGAP 108 *********9998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.086 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.3E-22 | 4 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MRTSCNGCRV LRKGCSDDCA IRPCLQWIKS PDSQAQATLF LAKFYGRTGL LNLINAGPQY 60 LRPAVFKSLL YEACGRIVSP INGSVGLLWT GDWDKCQAAV EAVLAGAPIK VETEEHALDS 120 KQFAHLKSPC AVDIRHVTKD DVVSDSNPKH MSQPKPRNRF KRTATGQKTL LGGGSNLGDL 180 TRFLNPGHEY WWPRLLGNGS TSAGEDVESM FSVESVEPKE PNKDQRGEVR LELSLGFAA* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010103761.1 | 1e-95 | LOB domain-containing protein 42 | ||||
Swissprot | Q9M886 | 4e-64 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | A0A2P5FDR3 | 1e-131 | A0A2P5FDR3_TREOI; Lateral organ boundaries domain containing protein | ||||
STRING | XP_010103761.1 | 6e-95 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1546 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 2e-66 | LOB domain-containing protein 41 |