PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G003731.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family C2H2
Protein Properties Length: 199aa    MW: 22356.2 Da    PI: 5.8856
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G003731.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.000126385123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          y+C+ C++ Fs+   L  H++ H
  HL.SW.v1.0.G003731.1 63 YECTFCKRGFSNAQALGGHMNIH 85
                          99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.08E-66190No hitNo description
Gene3DG3DSA:3.30.160.603.0E-56189IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.5726390IPR007087Zinc finger, C2H2
SMARTSM003550.00996385IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806585IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MDFSEQPNQD INNNNPNKDD AASMMIISES SDHDHDHDQH IDGDDDHHQQ PNRSSSSSVA  60
RSYECTFCKR GFSNAQALGG HMNIHRKDKA KLKQSVPPVI PPFSIINHET TQRQRQPLEI  120
PSTTTLVVNP SFIASPNPWL HHQDQGTNIR NDHNINIDDD RLQGKSDDDE SALDLELRLG  180
RVPQDSSTSS NRGTRKFF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004295977.21e-28PREDICTED: zinc finger protein ZAT5-like
TrEMBLA0A2P5DQQ81e-40A0A2P5DQQ8_PARAD; Zinc finger transcription factor
STRINGXP_004295977.16e-28(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33353162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.12e-16C2H2 family protein