PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G003647.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | WRKY | ||||||||
Protein Properties | Length: 440aa MW: 48300.3 Da PI: 5.5577 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.9 | 2.7e-30 | 247 | 305 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+vers++dp+ +++tY+g+H+h+ HL.SW.v1.0.G003647.1 247 TDLWAWRKYGQKPIKGSPYPRNYYRCSSSkGCAARKQVERSNTDPESFVVTYTGDHTHP 305 699************************998****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.8E-30 | 232 | 307 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.23E-26 | 240 | 307 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 33.453 | 241 | 307 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.4E-37 | 246 | 306 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.8E-25 | 248 | 305 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007263 | Biological Process | nitric oxide mediated signal transduction | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 440 aa Download sequence Send to blast |
MAEDWDLYAV VRSCKSTTTT SSSAAVSASS TASAAAATTD PMKGGQTTSS SEDTLSCLAS 60 LTFEEENDPF SFPNLVAEPR TNTFEELQQF YKPFFSNNSP TTITGTTTTT AQGIIPNSPI 120 SDFGGSSGQH LLHYQEQHHQ QQQQHLGTPN DAAVRPQFMH PQPYISGFGG LHGRRHYQLR 180 ELDRNNQVPV LLLKPDHRAK ATTPTTTLPL PPFQLPTMPI SHTPRSRKRK NQQKKMVCHV 240 SAENLSTDLW AWRKYGQKPI KGSPYPRNYY RCSSSKGCAA RKQVERSNTD PESFVVTYTG 300 DHTHPRPTHR NSLAGSTRNK LSPPPNITAI TKKDIMGSDH SPSPTQSTSK LSPTTQLTVA 360 QTEEYAAAKL QLEENESGEG DGGEKQSDDI LLEEELMDLD ENEEDEDDDD DVLIPNMSLS 420 EDFFLGLKEL GCSPPGAAC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 3e-19 | 248 | 308 | 18 | 80 | Disease resistance protein RRS1 |
5w3x_D | 3e-19 | 248 | 308 | 18 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00561 | DAP | Transfer from AT5G52830 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015878306.1 | 1e-127 | probable WRKY transcription factor 27 | ||||
TrEMBL | A0A2P5CB07 | 1e-160 | A0A2P5CB07_PARAD; WRKY domain containing protein | ||||
STRING | XP_010105730.1 | 2e-98 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6794 | 32 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52830.1 | 4e-58 | WRKY DNA-binding protein 27 |