PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | HL.SW.v1.0.G003378.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 351aa MW: 38623.4 Da PI: 7.1208 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 112.5 | 5.8e-35 | 22 | 153 | 2 | 100 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...................ssssas 71 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak +i +l+++ + HL.SW.v1.0.G003378.1 22 TGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKNSINKLAELppwhptanpapketdphatT----- 105 79**************************************************************99999877777643333320..... PP TCP 72 ec..........eaesssssasnsssg................kaaksaakskks 100 + + ++++s+ + ++ ++++ks ++ HL.SW.v1.0.G003378.1 106 -AwwtppkwlqrQLGHEQSN------PdhhngsgfiphqpldsDSIADTMKSFFP 153 .1333211112212222222......12222334566666555333333333333 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 4.8E-31 | 22 | 87 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.406 | 24 | 82 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 351 aa Download sequence Send to blast |
MEMKGVGGEI VQVQGGHIVR STGRKDRHSK VYTAKGPRDR RVRLSAHTAI QFYDVQDRLG 60 YDRPSKAVDW LIKKAKNSIN KLAELPPWHP TANPAPKETD PHATTAWWTP PKWLQRQLGH 120 EQSNPDHHNG SGFIPHQPLD SDSIADTMKS FFPTSSAASS MNNFQTYPQD IIQRTANPTQ 180 DLGLSLHSFH DHTIVHDQSS QGGVDHAPQN DHHHQHALFA AGFEPGYQRM VAWGNEAADN 240 RGGGYDFGSQ SLAPTQQAAT LFGLGSTASF NNQRGTLQSS FSPLVRAWDD HLAMASQKSQ 300 PNHQSSSSIF RTRFVSDGLS AYCIPPRIHS EDGENDDEQG GGGVVSERPS S |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-21 | 29 | 82 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 1e-21 | 29 | 82 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024183758.1 | 1e-120 | transcription factor TCP4-like | ||||
Swissprot | Q8LPR5 | 8e-67 | TCP4_ARATH; Transcription factor TCP4 | ||||
TrEMBL | A0A2P5E7T9 | 1e-145 | A0A2P5E7T9_TREOI; TCP transcription factor | ||||
STRING | XP_004303161.1 | 1e-117 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1163 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G15030.3 | 3e-59 | TCP family protein |