PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G002905.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

FAR1

Protein Properties

Length: 856aa MW: 97875.2 Da PI: 6.5133

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G002905.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	99.6	3.2e-31	87	177	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 fYn+YA++vGFs+r+s+s++s+r+g i++r+fvC keg+r+ ++k+ +++ +r+r+ tr+gCka+l vk++++gkw+v+ ++ eHnHe HL.SW.v1.0.G002905.1 87 FYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRtkDREIKRPRTITRVGCKASLSVKMQDSGKWVVSGFVREHNHE 175 9*************************************998888545677889******************************** PP FAR1 89 la 90 l+ HL.SW.v1.0.G002905.1 176 LV 177 97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-29	87	177	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.6E-32	299	391	IPR018289	MULE transposase domain
Pfam	PF04434	8.4E-13	567	613	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	11.239	579	615	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	9.3E-9	590	617	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 856 aa Download sequence Send to blast
MDNEVIEFDI GLGAGEGGSG REGDDDGLDI EHHVDDEEMA DSPPFTSGGS GGGFGGSGEI 60 YLPEGDLLDL EPSEGMEFES EEAAKAFYNS YARRVGFSTR VSSSRRSRRD GAIIQRQFVC 120 AKEGFRNLNE KRTKDREIKR PRTITRVGCK ASLSVKMQDS GKWVVSGFVR EHNHELVQPD 180 LVHCLRSHRQ ISGPAKTLID TLQAAGMGPR RIMSALIKEY GGISKVGFTE VDCRNYMRNN 240 RQRSLEGDIQ LLLDYLRQMH ADNSNFFYAV QGEEDQSSGN VFWADPKARM NYNYFGDTVT 300 FDTTYRSNRY RLPFAPFTGV NHHGQPVLFG CAFLINESES SFLWLFNTWL TAMSGRPPFS 360 ITTDHDAVIR SAIMQVFPET RHRFCKWHIF KKCQEKLSHV FLKHPTFEAD FHKCVNLTES 420 IEEFESCWLS LVDRYELRDH EWLQTIYSAR RQWVPVYLRD TFFAEMSITQ RSDSMNSYFD 480 GYINASTNLN QFFKLYEKAL ESRNEKEVKA DYDTMNTSPV LKTPSPMEKQ VSELYTRKLF 540 ARFQEELVGT LTFMASKAED DGEVITYQVS KYGEDHKAYY VKFNVLEMKA NCSCQMFEFS 600 GLLCRHILAV FRVTNVLTLP AHYILKRWTR NAKSSVILEE HCSDLYTNYL ESHTVRYNTL 660 RHEAFKFVDE GAKSSETYEA ALIALQKAAE KVDHAIKNSS KSAMVNGRFR GNSTVDASRV 720 NHTSGDREGS SGQHMSEDDM DKRIRELTNE LENANRKCEV YRANLLSVLK DIEDHKLQLS 780 IKVQNIKISM KDENQGRFAL DCRPWILVTN LAHGRLPCEE NMFEWMVANE GRQAGVKVSM 840 FTISLENAEG ITKHL*

Sequence ? help Back to Top

Protein Sequence Length: 856 aa Download sequence Send to blast

MDNEVIEFDI GLGAGEGGSG REGDDDGLDI EHHVDDEEMA DSPPFTSGGS GGGFGGSGEI  60
YLPEGDLLDL EPSEGMEFES EEAAKAFYNS YARRVGFSTR VSSSRRSRRD GAIIQRQFVC  120
AKEGFRNLNE KRTKDREIKR PRTITRVGCK ASLSVKMQDS GKWVVSGFVR EHNHELVQPD  180
LVHCLRSHRQ ISGPAKTLID TLQAAGMGPR RIMSALIKEY GGISKVGFTE VDCRNYMRNN  240
RQRSLEGDIQ LLLDYLRQMH ADNSNFFYAV QGEEDQSSGN VFWADPKARM NYNYFGDTVT  300
FDTTYRSNRY RLPFAPFTGV NHHGQPVLFG CAFLINESES SFLWLFNTWL TAMSGRPPFS  360
ITTDHDAVIR SAIMQVFPET RHRFCKWHIF KKCQEKLSHV FLKHPTFEAD FHKCVNLTES  420
IEEFESCWLS LVDRYELRDH EWLQTIYSAR RQWVPVYLRD TFFAEMSITQ RSDSMNSYFD  480
GYINASTNLN QFFKLYEKAL ESRNEKEVKA DYDTMNTSPV LKTPSPMEKQ VSELYTRKLF  540
ARFQEELVGT LTFMASKAED DGEVITYQVS KYGEDHKAYY VKFNVLEMKA NCSCQMFEFS  600
GLLCRHILAV FRVTNVLTLP AHYILKRWTR NAKSSVILEE HCSDLYTNYL ESHTVRYNTL  660
RHEAFKFVDE GAKSSETYEA ALIALQKAAE KVDHAIKNSS KSAMVNGRFR GNSTVDASRV  720
NHTSGDREGS SGQHMSEDDM DKRIRELTNE LENANRKCEV YRANLLSVLK DIEDHKLQLS  780
IKVQNIKISM KDENQGRFAL DCRPWILVTN LAHGRLPCEE NMFEWMVANE GRQAGVKVSM  840
FTISLENAEG ITKHL*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015892966.1	0.0	protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2C9UF08	0.0	A0A2C9UF08_MANES; Uncharacterized protein
STRING	XP_004290092.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]