PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | HL.SW.v1.0.G002897.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 277aa MW: 30325 Da PI: 7.1315 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 121.3 | 5.3e-38 | 10 | 108 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +CaaCk+lrrkC ++C++apyfp++qp+kfa vh+++G+ nv k+l+ ++ +re+a++sl+yeA+ar+rdPvyG++g+i+ l+++l++ HL.SW.v1.0.G002897.1 10 PCAACKFLRRKCMPGCIFAPYFPSDQPQKFASVHRIYGTGNVAKILNGINVAHREEAVNSLAYEAQARLRDPVYGVIGFISILHNHLNH 98 7**************************************************************************************** PP DUF260 90 lkaelallke 99 ++a l+ + + HL.SW.v1.0.G002897.1 99 ARARLNNASN 108 ***9998776 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.406 | 9 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.3E-37 | 10 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 277 aa Download sequence Send to blast |
MNIPPPPPPP CAACKFLRRK CMPGCIFAPY FPSDQPQKFA SVHRIYGTGN VAKILNGINV 60 AHREEAVNSL AYEAQARLRD PVYGVIGFIS ILHNHLNHAR ARLNNASNDL GGHTSPHPQP 120 QSQKIINPPP NGVPPMPNLE VNPNHQQQRQ QPQPQLRPFC FENIPRPQHP QQQMISNITF 180 DYIGEGGPFG PMVNPDMMEH YNSQMLMAGS IFNRGGGGGS SSVAATDGAC ESNNNNTNLN 240 GQLMQPNQID ALHDSSLDHQ LQSQLMLNSP NNNDEN* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-39 | 10 | 110 | 11 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-39 | 10 | 110 | 11 | 111 | LOB family transfactor Ramosa2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2353 | 34 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G66870.1 | 2e-41 | ASYMMETRIC LEAVES 2-like 1 |