PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G002705.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | WRKY | ||||||||
Protein Properties | Length: 459aa MW: 50258.1 Da PI: 7.2601 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 105.1 | 3.7e-33 | 288 | 345 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+vers +dp++v++tYeg+Hnh+ HL.SW.v1.0.G002705.1 288 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCSVKKRVERSYQDPSTVITTYEGTHNHP 345 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.0E-34 | 272 | 347 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-29 | 279 | 347 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.374 | 282 | 347 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.9E-38 | 287 | 346 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.5E-26 | 288 | 345 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 459 aa Download sequence Send to blast |
MKDNKQVLNL SSLQTKPLTT NTLSLSYTFL FLSFPFFLSF LISIRSNMSD IEPKDLYYYS 60 SSPFAHDHHQ IMTVDRDFIS SAGSSSSSSS PFITTMHNTP TNPSGFLGFD SGSGGGFISP 120 TMEDFYYYYN NSSSFSNNAT TTTAFGLSSS SSYQAAALSS DDQKLGLMMM MTTPSPPLSP 180 PQVAAVVSNC NDNNNHSNIN SLSSSSTTGD NHDQDHDSSN NNNNRDQKRK GSEDRDQKDL 240 DHDDDDSNSK KVSKGNNNKN NNNSKKGEKK QKEPRFAFMT KSEVDHLEDG YRWRKYGQKA 300 VKNSPYPRSY YRCTTQKCSV KKRVERSYQD PSTVITTYEG THNHPLPSAL RGNAAAAAAA 360 MFPPSMSSLM GGAAAGFPHH QEYNSLFGQM PNNYMINNNN NILLGGGGRS GSSSSTITAS 420 TAGILSQAAY HQQHGRGDDD FGLLQDMVPG TMFLKQEP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-27 | 280 | 348 | 10 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 3e-27 | 280 | 348 | 10 | 78 | Probable WRKY transcription factor 4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2P5DL95 | 2e-81 | A0A2P5DL95_TREOI; WRKY domain containing protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2231 | 34 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29860.1 | 2e-49 | WRKY DNA-binding protein 71 |