PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G002688.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB
Protein Properties Length: 404aa    MW: 44804.2 Da    PI: 6.0127
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G002688.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.21e-191461148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g+WT+eEde+lvd+++++G g+W++ ++  g++R++k+c++rw +yl
  HL.SW.v1.0.G002688.1 14 KGPWTPEEDEKLVDYIRRHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61
                          79********************************************97 PP
2Myb_DNA-binding51.52.3e-1667112148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           rg+++++E++l++++++ lG++ W+tIa +++ gRt++++k+ w+++l
  HL.SW.v1.0.G002688.1  67 RGKFSEDEEKLIINLHAVLGNK-WSTIAGHLP-GRTDNEIKNLWNTHL 112
                           89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-25664IPR009057Homeodomain-like
PROSITE profilePS5129418.786961IPR017930Myb domain
SuperFamilySSF466892.21E-3111108IPR009057Homeodomain-like
SMARTSM007179.7E-161363IPR001005SANT/Myb domain
PfamPF002497.1E-181461IPR001005SANT/Myb domain
CDDcd001671.99E-121661No hitNo description
PROSITE profilePS5129425.62562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.1E-2665116IPR009057Homeodomain-like
SMARTSM007171.0E-1366114IPR001005SANT/Myb domain
PfamPF002491.2E-1467112IPR001005SANT/Myb domain
CDDcd001671.67E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MGRSPSSDEN GLKKGPWTPE EDEKLVDYIR RHGHGSWRAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SEDEEKLIIN LHAVLGNKWS TIAGHLPGRT DNEIKNLWNT HLKKKLLQMG  120
IDPVTHRPRT DLNILSSLPQ LIAAANFASN FLNHNNNPTN HTTAWDTSQS PTPSKLQLLH  180
NIFQVLGTSA PTPSPNMEAM LSLLGSSVSA SVSASALTSV NHRNQNLQPS IVDEYLRSVQ  240
DHYNNNNITS CGLLGSDDHF VINNNNNNNP MATTTTVEAT HQQQSIISLD DNPYTTMSGS  300
KLLSNSANMI IDHHHDDFNH QLPRLVSSAA SPNDNDGDDG DDMMLMSSSS DSKNQNNNKS  360
NDKANNNYSS SSTNFDQAWG DLIEDDHEPA NDEDSCYWKD IME*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-29121165108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010087464.21e-120transcription factor MYB41
TrEMBLA0A2P5BL541e-130A0A2P5BL54_TREOI; MYB transcription factor
STRINGXP_010087464.11e-120(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40234172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.28e-89myb domain protein 9