PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G002524.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family HD-ZIP
Protein Properties Length: 196aa    MW: 22618.9 Da    PI: 5.0657
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G002524.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.71.3e-201264456
                          -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                          + +f++eql+ Le +F++++ p  +++++LAk+lgL+ rqV +WFqNrRa+ +
  HL.SW.v1.0.G002524.1 12 KKRFSDEQLKSLEGMFQSDSRPEPRTKQKLAKELGLQPRQVAIWFQNRRARSR 64
                          678************************************************98 PP
2HD-ZIP_I/II114.46.9e-3711102293
           HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                           +k+r+s+eq+k+LE +F+++++ ep+ K++la+eLglqprqva+WFqnrRAR +tkq+E++y+ Lk +y +l+++ e+L++e++eL+++
  HL.SW.v1.0.G002524.1  11 NKKRFSDEQLKSLEGMFQSDSRPEPRTKQKLAKELGLQPRQVAIWFQNRRARSRTKQIEREYNILKGSYSNLVSSFESLKRENQELNNQ 99 
                           79*************************************************************************************** PP

           HD-ZIP_I/II  91 lke 93 
                           l+e
  HL.SW.v1.0.G002524.1 100 LQE 102
                           987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007118.172666IPR001356Homeobox domain
SMARTSM003892.9E-18870IPR001356Homeobox domain
SuperFamilySSF466897.7E-191177IPR009057Homeodomain-like
PfamPF000465.6E-181164IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.4E-201273IPR009057Homeodomain-like
CDDcd000863.72E-161267No hitNo description
PRINTSPR000314.9E-63746IPR000047Helix-turn-helix motif
PROSITE patternPS0002704164IPR017970Homeobox, conserved site
PRINTSPR000314.9E-64662IPR000047Helix-turn-helix motif
PfamPF021831.8E-1466107IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MKNTMTCREN NKKRFSDEQL KSLEGMFQSD SRPEPRTKQK LAKELGLQPR QVAIWFQNRR  60
ARSRTKQIER EYNILKGSYS NLVSSFESLK RENQELNNQL QEVTTLLGKD EGSGELESDH  120
TEKGIEASFE SKDLKSFKKI VEVHHGDDSN SRDVESVGKE TEVLDLASSI DDWSCFESGH  180
YVDEPNCSSW WEFWS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010100199.12e-61homeobox-leucine zipper protein ATHB-12
SwissprotP468975e-37ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLA0A2P5F4S93e-83A0A2P5F4S9_TREOI; Octamer-binding transcription factor
STRINGXP_010100199.17e-61(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16057910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.12e-39homeobox 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]