PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G002424.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family BES1
Protein Properties Length: 616aa    MW: 69830.5 Da    PI: 5.894
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G002424.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822135.36.3e-4266139275
                DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskp 75 
                           ++g+++++kE+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+Vl+AL+reAGwvve DGttyr++  p
  HL.SW.v1.0.G002424.1  66 AKGKREREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWVVETDGTTYRHSPPP 139
                           6899*****************************************************************66544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056875.4E-4167141IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514451.46E-151176609IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.803.5E-164179608IPR013781Glycoside hydrolase, catalytic domain
PfamPF013734.0E-80185573IPR001554Glycoside hydrolase, family 14
PRINTSPR007508.4E-54216230IPR001554Glycoside hydrolase, family 14
PRINTSPR007508.4E-54237255IPR001554Glycoside hydrolase, family 14
PRINTSPR007508.4E-54259280IPR001554Glycoside hydrolase, family 14
PRINTSPR007508.4E-54352374IPR001554Glycoside hydrolase, family 14
PRINTSPR007508.4E-54425444IPR001554Glycoside hydrolase, family 14
PRINTSPR007508.4E-54459475IPR001554Glycoside hydrolase, family 14
PRINTSPR007508.4E-54476487IPR001554Glycoside hydrolase, family 14
PRINTSPR007508.4E-54494517IPR001554Glycoside hydrolase, family 14
PRINTSPR007508.4E-54532554IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 616 aa     Download sequence    Send to blast
MNDNLDPQSD HSSDYLSHFQ PQTQAQTPTQ PRRPRGFAAT AAAAAAMTNT SGAVPSTAAA  60
ASTAPAKGKR EREKEKERTK LRERHRRAIT SRMLAGLRQY GNFPLPARAD MNDVLAALAR  120
EAGWVVETDG TTYRHSPPPS QLVHTLFPSL LYNFEFIAQL LQLIQDFRST NNGNDFTGTP  180
YVPVYVMLAT STVNQFCQLL DPEGVRQELS HLQSLNVDGI VVECWWGIIE GWSPQKYIWS  240
GYRDLFNIIR EFKLKLQVVV AFHEFGGSES GDTMITLPRW VLEIGKENQD IFFTDREGRR  300
NTECLSWGID KERVLQGRTG IEVYFDLMRS FRTEFDDLFA EGMICAVEIG LGASGELKYP  360
SFSERMGWRY PGVGEFQCFD KYLQQSLRKA AKLRGHSFWA RGPDNAGHYN SRPHETGFFC  420
ERGDYDSYYG RFFLQWYGQL LIDHADNVLS LASLAFEETN IIVKVPEVYW WYRTPSHAAE  480
LTSGYYNPTN QDGYSPVFEV LKKYSVTVKF VCSGLQMSSQ DIDEAFADPE GLSWQVFNSA  540
WDRGLAIAGE NALTCHREGH VKLVEMAKPR NDPDRRQFSF FVYRQPSLVQ GTMCFSELDD  600
LIKSMHGEIV GDLVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A1e-11518155311383Beta-amylase
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023543491.10.0beta-amylase 8-like isoform X2
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLA0A0K0PUA90.0A0A0K0PUA9_CAMSI; Beta-amylase
STRINGXP_004164169.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF119023032
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.10.0beta-amylase 2
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]