PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G002177.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family TALE
Protein Properties Length: 461aa    MW: 50544.8 Da    PI: 6.1981
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G002177.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.31.1e-073984312154
                           HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
              Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                           k +yp++e++++L +++gL+ +q+ +WF N+R +
  HL.SW.v1.0.G002177.1 398 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 431
                           469*****************************87 PP
2ELK28.73e-10352373122
                   ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                           ELKh+L+++Y+++++++++E++
  HL.SW.v1.0.G002177.1 352 ELKHELKQGYKEKIVDIREEIL 373
                           9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.8E-20187231IPR005540KNOX1
PfamPF037903.0E-17190230IPR005540KNOX1
SMARTSM012562.7E-29240295IPR005541KNOX2
PfamPF037913.0E-21244294IPR005541KNOX2
SMARTSM011886.1E-4352373IPR005539ELK domain
PfamPF037891.1E-6352373IPR005539ELK domain
PROSITE profilePS512139.969352372IPR005539ELK domain
PROSITE profilePS5007111.726372435IPR001356Homeobox domain
SuperFamilySSF466895.13E-16374437IPR009057Homeodomain-like
SMARTSM003894.7E-11374439IPR001356Homeobox domain
CDDcd000865.37E-12375436No hitNo description
Gene3DG3DSA:1.10.10.605.0E-25379436IPR009057Homeodomain-like
PfamPF059201.3E-17392431IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MAYHNHLSSQ DLPLHHHHHF GDQSQQQQQN QTILPDQLAI AHSSPDPTSK SVQNAAPNWL  60
NNALLRTQTH AHFGSADNAN GNSHVSNTNF LNLHTASDSA NSGQASNQWL TRPILQRNHS  120
DVIDDVAAAA AAAAAAGDSM IAGAMSHDSA EMKATTNGDN NNLNKSEGVV VESGGGDGGG  180
VINWQNARNK AEILSHPLYD QLLSAHVACL RIATPVDQLP RIDAQLAQSQ NVVAKYSALS  240
QGLVGDDKEL DQFMTHYVLL LCSFKEQLQQ HVRVHAMEAV MACWEIEQSL QSLTGVSPGE  300
GTGATMSDDD DDQVDSDANL FDGSLEGPDS MGFGPLIPTE SERSLMERVR QELKHELKQG  360
YKEKIVDIRE EILRKRRAGK LPGDTTSVLK AWWQSHSKWP YPTEEDKARL VQETGLQLKQ  420
INNWFINQRK RNWHSNPSTS TVLKSKRKST AGENSGDRYA *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011458838.10.0PREDICTED: homeobox protein knotted-1-like 3 isoform X1
SwissprotO041360.0KNAP3_MALDO; Homeobox protein knotted-1-like 3
TrEMBLA0A2P5DDC50.0A0A2P5DDC5_PARAD; Knotted-like homeobox transcription factor
STRINGXP_004290929.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.10.0KNOTTED1-like homeobox gene 3