PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G002152.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

Dof

Protein Properties

Length: 359aa MW: 37946.6 Da PI: 8.7862

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G002152.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.6	6.8e-39	73	131	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++l+cprCds+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknk++ HL.SW.v1.0.G002152.1 73 PESLRCPRCDSANTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKSN 131 57899***************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-25	74	129	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	9.3E-33	75	130	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.441	76	130	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	78	114	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MIQELLGNSG LIGGERKISI NGGLLEATTL LPNLSPSPSN CSSSTPSTTT ATNTTTTSAA 60 AAGTTTSNNN NNPESLRCPR CDSANTKFCY YNNYNLTQPR HFCKTCRRYW TKGGALRNVP 120 IGGGCRKNKS NTIVSSSVVS GKTGGVSAAG KMKMVMSSEI GRSGFSGFDH DQLSPSPILW 180 GSPQNSHLLA LLRSTTQNPN PNPSSMCGGK EEAGSNGMIG SHNMMSNSTA STTDSGKGLD 240 PLSQAPSLGL CSSFWRNNQL NQNPHYQQMN GLISTASLGH NDHQAHHQNS NNGFQELYQR 300 LRSSSSTTSP ANYYNDHHNH STATVAAGGG DQLGFWNINP PAFSSWSDLS TTTNGAYP*

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MIQELLGNSG LIGGERKISI NGGLLEATTL LPNLSPSPSN CSSSTPSTTT ATNTTTTSAA  60
AAGTTTSNNN NNPESLRCPR CDSANTKFCY YNNYNLTQPR HFCKTCRRYW TKGGALRNVP  120
IGGGCRKNKS NTIVSSSVVS GKTGGVSAAG KMKMVMSSEI GRSGFSGFDH DQLSPSPILW  180
GSPQNSHLLA LLRSTTQNPN PNPSSMCGGK EEAGSNGMIG SHNMMSNSTA STTDSGKGLD  240
PLSQAPSLGL CSSFWRNNQL NQNPHYQQMN GLISTASLGH NDHQAHHQNS NNGFQELYQR  300
LRSSSSTTSP ANYYNDHHNH STATVAAGGG DQLGFWNINP PAFSSWSDLS TTTNGAYP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024924337.1	1e-105	dof zinc finger protein DOF1.1-like
Refseq	XP_024932646.1	1e-105	dof zinc finger protein DOF1.1-like
TrEMBL	A0A2P5FY71	1e-141	A0A2P5FY71_TREOI; Zinc finger, Dof-type
STRING	XP_009366405.1	4e-99	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7219	32	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	2e-33	TARGET OF MONOPTEROS 6