PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G002126.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family GRAS
Protein Properties Length: 550aa    MW: 61151.8 Da    PI: 6.5824
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G002126.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS319.28.5e-981665422374
                  GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                            +lLlecA a+s ++l +a++++ +l ++ sp++ ++ +R++ayf +A+a+r+++s+ +++  ++p + +  n+++   a+++f++vsP
  HL.SW.v1.0.G002126.1 166 MTLLLECAVAISVDNLGEAHRMILELTQITSPYApSSAERVVAYFSKAMASRVVNSWLGIVL-CSPYPLPLVNHKSLHDAFQAFNNVSP 253
                           579*******************************99***********************994.56666666788889999********* PP

                  GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvp.f 176
                           ++kf+h+t NqaIle++++ +r+H+iD+di+qGlQWpaL++ La+R+egpp ++RiTgvgs    s e l++tg+ L++fA++lg++ f
  HL.SW.v1.0.G002126.1 254 FVKFAHFTSNQAILESFHRRDRLHVIDLDIMQGLQWPALFHILATRAEGPPsHVRITGVGS----SPELLSQTGQHLSSFAKRLGINsF 338
                           ***********************************************99888*********....9********************55* PP

                  GRAS 177 efnvlvak...rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262
                           ef+++v +    l +++++++ v++gE+laV++    h l+d++++       +++lv +l+P+++++veq+    s+sFl+rf+ +l+
  HL.SW.v1.0.G002126.1 339 EFHPVVRNpksGLLNVSVSTFGVRRGETLAVHWLR--HCLYDSTGPEWR----TIRLVEELKPRIFTLVEQDFAQ-SGSFLDRFVGSLH 420
                           ****96654235677799***************98..888877777666....*******************998.899********** PP

                  GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerlee......aGFkpvplsekaakqaklllrkvk 345
                           yys++fdsl a l++++ +r++vE+ ll+rei n++a  g  r   +e+l+ Wr+ l +       G+++v++s + ++qa+l+l++++
  HL.SW.v1.0.G002126.1 421 YYSTMFDSLGAYLGTDDPNRHTVEHCLLHREINNMLAIGGPGR-SGEEKLRDWRSELVRrssgggGGLEQVAMSGNCMAQAQLILNMFS 508
                           *****************************************95.55678******997644444469*********************9 PP

                  GRAS 346 ..sdg..yrve.eesgslvlgWkdrpLvsvSaWr 374
                             + g  y++   ++g+l lgWkd  L+++SaW+
  HL.SW.v1.0.G002126.1 509 ggNSGygYSLVqGNDGTLRLGWKDTCLYTASAWT 542
                           7555544555426788888**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098547.05139517IPR005202Transcription factor GRAS
PfamPF035142.9E-95166542IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MAFSSLRNPP SFPLTHHLFS PPMKAGTFEM VHGGVLDMIQ HQHHEYYLNP STNSSLIPVQ  60
TSMINQFPKP VNNELSDWVE QITKQLIDDP PEITACSSLE TFQAATTTSS DDNYFVQSAS  120
LSGDYFRPRK IPRIELANTN TNSSSSNNNN NNNDLDDQEQ NLTQMMTLLL ECAVAISVDN  180
LGEAHRMILE LTQITSPYAP SSAERVVAYF SKAMASRVVN SWLGIVLCSP YPLPLVNHKS  240
LHDAFQAFNN VSPFVKFAHF TSNQAILESF HRRDRLHVID LDIMQGLQWP ALFHILATRA  300
EGPPSHVRIT GVGSSPELLS QTGQHLSSFA KRLGINSFEF HPVVRNPKSG LLNVSVSTFG  360
VRRGETLAVH WLRHCLYDST GPEWRTIRLV EELKPRIFTL VEQDFAQSGS FLDRFVGSLH  420
YYSTMFDSLG AYLGTDDPNR HTVEHCLLHR EINNMLAIGG PGRSGEEKLR DWRSELVRRS  480
SGGGGGLEQV AMSGNCMAQA QLILNMFSGG NSGYGYSLVQ GNDGTLRLGW KDTCLYTASA  540
WTTSSTYNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-12417154525382Protein SCARECROW
5b3h_A1e-12417154524381Protein SCARECROW
5b3h_D1e-12417154524381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269|PubMed:16339910}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021662072.10.0protein SCARECROW-like
SwissprotQ2Z2E91e-123SCR_IPONI; Protein SCARECROW
TrEMBLA0A2P5E8840.0A0A2P5E884_TREOI; GRAS transcription factor
STRINGcassava4.1_034131m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117873138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-117GRAS family protein