PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G002118.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 421aa    MW: 47574.6 Da    PI: 4.4533
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G002118.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.5e-1952101255
                   AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           +y GVr+++ +grWvAeI+d      ++ r++lg+++taeeAa+a+++a+  l+g
  HL.SW.v1.0.G002118.1  52 RYVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTYDTAEEAARAYDEAACLLRG 101
                           79*******.7*********33....35**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.53E-3151108No hitNo description
PROSITE profilePS5103219.95452109IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-2752108IPR001471AP2/ERF domain
PfamPF008471.9E-1452101IPR001471AP2/ERF domain
SMARTSM003808.5E-3552115IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-1952110IPR016177DNA-binding domain
PRINTSPR003674.2E-85364IPR001471AP2/ERF domain
PRINTSPR003674.2E-87591IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MVRKRKGSDQ EEEERESSNE ISVGNWNNEA TSATAAAASA VALNGVGRAR KRYVGVRQRP  60
SGRWVAEIKD TIQKIRVWLG TYDTAEEAAR AYDEAACLLR GANTRTNFWP SSPFHAKPAL  120
PSRIVNLLLL RLKARNLNNN NNHNYGNNNN NACGSMAFNF PCIQQEQAVE DHREDTLFGN  180
LFNEQEFCRM KEESDILSNN ISDITTADYM AENFEWSLVG TDGSSTNNGA RFDGENQCEE  240
ENKEEFDQIG GVDLRFVDLL QSFSGYCCPF EIAEEMVKPM ETEKYEDEET IIGEAMKRMK  300
YERKFSASLY AFNGVSECLR LKLDSKTERV GESRQGELFK LKNESKDKNS QCYTEETIQE  360
RVQEETGINL QSPTEIGSLS FSYSSSSSSS VSPESEELLW SPLEFPPCYF LFEADMKIMT  420
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1445108771Ethylene-responsive transcription factor ERF096
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015895011.11e-118ethylene-responsive transcription factor RAP2-2-like
TrEMBLA0A2P5BZK00.0A0A2P5BZK0_PARAD; AP2/ERF transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33383267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.14e-18related to AP2 11