PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | HL.SW.v1.0.G001821.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 245aa MW: 27529.6 Da PI: 8.1632 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 103.4 | 1.2e-32 | 101 | 203 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+kv tpsdv+k++rlv+pk++ae++ ++ +e++ l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++ HL.SW.v1.0.G001821.1 101 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRG 189 89***************************966778999*************************************************76 PP SSSEE..EEEEE-S CS B3 86 grsefelvvkvfrk 99 +++++l++ ++r+ HL.SW.v1.0.G001821.1 190 VTDKERLFIDWRRR 203 669999*****998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.8E-43 | 96 | 209 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.29E-31 | 98 | 206 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.08E-26 | 99 | 188 | No hit | No description |
PROSITE profile | PS50863 | 14.847 | 101 | 204 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.3E-24 | 101 | 204 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.7E-30 | 101 | 203 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 245 aa Download sequence Send to blast |
MDFESSARDN NRMGFSHEDS IEHSTIMATR GGVGAGPSWA TAADRSIDDH QMMMMMNGPD 60 TKLELMNSSP ASGNDDAVSM SRSSSGGGGG AAVVVEREHM FDKVVTPSDV GKLNRLVIPK 120 QHAEKYFPLD SSTNEKGLLL NFEDRNGKPW RFRYSYWNSS QSYVMTKGWS RFVKEKKLDA 180 GDIVSFQRGV TDKERLFIDW RRRPEAVLPD HSSTINIPFS FHHNQHQSPH HHHHHHPTSR 240 GALR* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 3e-66 | 94 | 206 | 1 | 116 | B3 domain-containing transcription factor NGA1 |
5os9_B | 3e-66 | 94 | 206 | 1 | 116 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Regulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | FP096459 | 3e-67 | FP096459.1 Phyllostachys edulis cDNA clone: bphylf028l17, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020550733.1 | 4e-80 | B3 domain-containing transcription factor NGA1 isoform X2 | ||||
Swissprot | O82799 | 7e-68 | NGA1_ARATH; B3 domain-containing transcription factor NGA1 | ||||
TrEMBL | A0A2P5CJ92 | 9e-95 | A0A2P5CJ92_TREOI; B3 DNA binding domain containing protein | ||||
STRING | XP_008239252.1 | 2e-75 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2338 | 33 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G46870.1 | 2e-67 | B3 family protein |