PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G001728.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family NAC
Protein Properties Length: 378aa    MW: 42177.4 Da    PI: 7.4757
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G001728.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.21.9e-50161501129
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                           lppGfrFhP+deelv++yL +k+++++ +l   + evd++k+ePwd+p+++  + kewyf+s+rd+kyatg r+nrat+sgyWkatgkd
  HL.SW.v1.0.G001728.1  16 LPPGFRFHPRDEELVCDYLMNKITHSDSTL---MIEVDLNKSEPWDIPETACVGGKEWYFYSQRDRKYATGLRTNRATASGYWKATGKD 101
                           79***********************99666...889************7777799********************************** PP

                   NAM  90 kevlsk..kgel.........vglkktLvfykgrapkgektdWvmheyrle 129
                           ++++ k  +  +         vg++ktLvfy+grapkg+ktdWvmhe+rle
  HL.SW.v1.0.G001728.1 102 RPIFGKgkG--AkghnthyalVGMRKTLVFYQGRAPKGKKTDWVMHEFRLE 150
                           *****9650..3355567777***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-593173IPR003441NAC domain
PROSITE profilePS5100555.0316172IPR003441NAC domain
PfamPF023655.8E-2717149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MMMMSSSSIS MVESKLPPGF RFHPRDEELV CDYLMNKITH SDSTLMIEVD LNKSEPWDIP  60
ETACVGGKEW YFYSQRDRKY ATGLRTNRAT ASGYWKATGK DRPIFGKGKG AKGHNTHYAL  120
VGMRKTLVFY QGRAPKGKKT DWVMHEFRLE GPLAPKLSSL KEDWVLCRVF YKNREVATSA  180
KPNMGLTTYF GEKTGYNSKS LPPLMDAYIS FEKPQKIQSS PEHDYNNYYN SGDHNKAHNI  240
HEHLPCFSNN MNLPQGSYQT HDLIFKHSTQ MEPNLGIRST SSSTAHEATA LGHHGIPNLM  300
DTSTSSSTLI NHCLNPCRGD GGGGGEDEVL RAVLNQITKM ESNPNLDDSP LLSGGEGSSE  360
SYLSEVAMGM PNIWSHY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-481117312166NO APICAL MERISTEM PROTEIN
1ut4_B4e-481117312166NO APICAL MERISTEM PROTEIN
1ut7_A4e-481117312166NO APICAL MERISTEM PROTEIN
1ut7_B4e-481117312166NO APICAL MERISTEM PROTEIN
4dul_A4e-481117312166NAC domain-containing protein 19
4dul_B4e-481117312166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023915297.11e-130NAC domain-containing protein 21/22-like
SwissprotQ84TE61e-102NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A2P5FZK30.0A0A2P5FZK3_TREOI; NAC domain containing protein
STRINGXP_002529954.11e-127(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100103241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.29e-95NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]