PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G001553.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family HD-ZIP
Protein Properties Length: 188aa    MW: 21315 Da    PI: 9.099
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G001553.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.32.7e-182881256
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                          r+R ++t+ q++ Le+ F ++++++ e++ +LA+klgL+ rqV +W+qNrRa++k
  HL.SW.v1.0.G001553.1 28 RTR-RLTQAQVRLLETSFTSDHKLQSERKLHLAAKLGLSPRQVAIWYQNRRARHK 81
                          444.89***********************************************99 PP
2HD-ZIP_I/II102.63.4e-3328119293
           HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                           + rrl++ qv+lLE+sF++++kL++erK +la +Lgl+prqva+W+qnrRAR+kt+ +E dy++++ ++d + +e++rLe+ev  L++e
  HL.SW.v1.0.G001553.1  28 RTRRLTQAQVRLLETSFTSDHKLQSERKLHLAAKLGLSPRQVAIWYQNRRARHKTQTVEFDYRSIQLKLDDVLAEKKRLEREVGMLKHE 116
                           789************************************************************************************99 PP

           HD-ZIP_I/II  91 lke 93 
                           l++
  HL.SW.v1.0.G001553.1 117 LNR 119
                           975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.85E-181883IPR009057Homeodomain-like
PROSITE profilePS5007116.4062383IPR001356Homeobox domain
SMARTSM003891.5E-162687IPR001356Homeobox domain
CDDcd000862.20E-142783No hitNo description
PfamPF000461.1E-152881IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.7E-183281IPR009057Homeodomain-like
PRINTSPR000311.3E-55463IPR000047Helix-turn-helix motif
PROSITE patternPS0002705881IPR017970Homeobox, conserved site
PRINTSPR000311.3E-56379IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MDFQCLDILT DETKQNQDLS KPLTQQRRTR RLTQAQVRLL ETSFTSDHKL QSERKLHLAA  60
KLGLSPRQVA IWYQNRRARH KTQTVEFDYR SIQLKLDDVL AEKKRLEREV GMLKHELNRA  120
REMLLRASGN DGGGRSSPDA SLPSVISTSG VDDHGSSSSL QNYYTFGTEN VAELPVGELY  180
TCLSPWP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010093963.16e-77homeobox-leucine zipper protein ATHB-40
TrEMBLA0A2P5FJ645e-96A0A2P5FJ64_TREOI; Octamer-binding transcription factor
STRINGXP_010093963.12e-76(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110112239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.13e-22homeobox protein 40