PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G001523.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family NF-YC
Protein Properties Length: 269aa    MW: 30065.9 Da    PI: 5.8696
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G001523.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC178.85.1e-56831871102
                 NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrt 86 
                           ql++fw++q   ie++tdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa++rt
  HL.SW.v1.0.G001523.1  83 QLQMFWANQmqeIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRT 171
                           89******988889*************************************************************************** PP

                 NF-YC  87 difdflvdivprdelk 102
                           d+fdflvdi+prdelk
  HL.SW.v1.0.G001523.1 172 DVFDFLVDIIPRDELK 187
                           *************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.93E-3464177IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.9E-3797169IPR009072Histone-fold
PfamPF008082.3E-21105168IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MDQSEQSQQQ QQQPVVGMVA GSGQMSYGPS SYQTAPMVAS GAPAVAVPSP TQPPANFSNS  60
SHQLAFQQAQ HFHHQQQQQQ QQQLQMFWAN QMQEIEQTTD FKNHSLPLAR IKKIMKADED  120
VRMISAEAPV IFAKACEMFI LELTLRSWIH TEENKRRTLQ KNDIAAAISR TDVFDFLVDI  180
IPRDELKEEG LGVTKATLPV VGSPADIPYY YVQQQHPAGP TGMIMGKPVD QAAMYAAQQP  240
RPPMAFVPWP QTQPQQQQQQ QQQPQTDT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B4e-5991183395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155161RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015882049.11e-144nuclear transcription factor Y subunit C-2
RefseqXP_015882050.11e-144nuclear transcription factor Y subunit C-2
RefseqXP_015882052.11e-144nuclear transcription factor Y subunit C-2
RefseqXP_015882054.11e-144nuclear transcription factor Y subunit C-2
RefseqXP_024929310.11e-144nuclear transcription factor Y subunit C-2
RefseqXP_024929311.11e-144nuclear transcription factor Y subunit C-2
TrEMBLA0A2P5CB241e-150A0A2P5CB24_TREOI; Nuclear transcription factor Y subunit C
STRINGEMJ129841e-142(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123722836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.22e-84nuclear factor Y, subunit C2