PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G001523.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | NF-YC | ||||||||
Protein Properties | Length: 269aa MW: 30065.9 Da PI: 5.8696 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 178.8 | 5.1e-56 | 83 | 187 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrt 86 ql++fw++q ie++tdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa++rt HL.SW.v1.0.G001523.1 83 QLQMFWANQmqeIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRT 171 89******988889*************************************************************************** PP NF-YC 87 difdflvdivprdelk 102 d+fdflvdi+prdelk HL.SW.v1.0.G001523.1 172 DVFDFLVDIIPRDELK 187 *************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.93E-34 | 64 | 177 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 1.9E-37 | 97 | 169 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.3E-21 | 105 | 168 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MDQSEQSQQQ QQQPVVGMVA GSGQMSYGPS SYQTAPMVAS GAPAVAVPSP TQPPANFSNS 60 SHQLAFQQAQ HFHHQQQQQQ QQQLQMFWAN QMQEIEQTTD FKNHSLPLAR IKKIMKADED 120 VRMISAEAPV IFAKACEMFI LELTLRSWIH TEENKRRTLQ KNDIAAAISR TDVFDFLVDI 180 IPRDELKEEG LGVTKATLPV VGSPADIPYY YVQQQHPAGP TGMIMGKPVD QAAMYAAQQP 240 RPPMAFVPWP QTQPQQQQQQ QQQPQTDT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 4e-59 | 91 | 183 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 155 | 161 | RRTLQKN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015882049.1 | 1e-144 | nuclear transcription factor Y subunit C-2 | ||||
Refseq | XP_015882050.1 | 1e-144 | nuclear transcription factor Y subunit C-2 | ||||
Refseq | XP_015882052.1 | 1e-144 | nuclear transcription factor Y subunit C-2 | ||||
Refseq | XP_015882054.1 | 1e-144 | nuclear transcription factor Y subunit C-2 | ||||
Refseq | XP_024929310.1 | 1e-144 | nuclear transcription factor Y subunit C-2 | ||||
Refseq | XP_024929311.1 | 1e-144 | nuclear transcription factor Y subunit C-2 | ||||
TrEMBL | A0A2P5CB24 | 1e-150 | A0A2P5CB24_TREOI; Nuclear transcription factor Y subunit C | ||||
STRING | EMJ12984 | 1e-142 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12372 | 28 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 2e-84 | nuclear factor Y, subunit C2 |