PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G001459.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family YABBY
Protein Properties Length: 193aa    MW: 21367.9 Da    PI: 4.4896
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G001459.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY207.26e-6461632166
                 YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnv 86 
                           ++f+ seq+CyvqC+fC+til+vsvP +sl++vvtvrCGhCt+llsvn++kas    qlla+ s           +++  ++e+++  +
  HL.SW.v1.0.G001459.1   6 QLFNLSEQICYVQCGFCTTILLVSVPCSSLSMVVTVRCGHCTTLLSVNMMKASfvplQLLASLS-----------QTH-EQKEEVDFEE 82 
                           78999********************************************998833333333333...........222.2233333333 PP

                 YABBY  87 ekeesastsvsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPki 166
                           ++ ++a  + s    s+ne+ ++  v + v++PPekrqr+Psayn+fi+eei+r+ka+nP+++h+eafsaa+knWahfP+ 
  HL.SW.v1.0.G001459.1  83 MEAQNAIDTCSPVVSSDNEEGDSVSVNQiVNKPPEKRQRAPSAYNQFIREEIKRLKAENPNMAHKEAFSAASKNWAHFPPT 163
                           333333333333334666666666666669************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046903.0E-6210164IPR006780YABBY protein
SuperFamilySSF470951.7E-9110164IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.5E-6113164IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MSALNQLFNL SEQICYVQCG FCTTILLVSV PCSSLSMVVT VRCGHCTTLL SVNMMKASFV  60
PLQLLASLSQ THEQKEEVDF EEMEAQNAID TCSPVVSSDN EEGDSVSVNQ IVNKPPEKRQ  120
RAPSAYNQFI REEIKRLKAE NPNMAHKEAF SAASKNWAHF PPTQHIEDGE SCNQGEEENN  180
ITWDSDVNKN AP*
Functional Description ? help Back to Top
Source Description
UniProtEssential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024024007.11e-103axial regulator YABBY 4
SwissprotQ9LDT39e-68YAB4_ARATH; Axial regulator YABBY 4
TrEMBLA0A2P5FMG11e-110A0A2P5FMG1_TREOI; YABBY protein
STRINGXP_010100436.11e-102(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61442852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23420.14e-70YABBY family protein
Publications ? help Back to Top
  1. Lora J,Hormaza JI,Herrero M
    Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT).
    New Phytol., 2015. 208(2): p. 584-95
    [PMID:25991552]
  2. Skinner DJ,Brown RH,Kuzoff RK,Gasser CS
    Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function.
    BMC Plant Biol., 2016. 16(1): p. 143
    [PMID:27350128]
  3. Simon MK,Skinner DJ,Gallagher TL,Gasser CS
    Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors.
    Genetics, 2017. 207(4): p. 1489-1500
    [PMID:28971961]