PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G001346.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family WRKY
Protein Properties Length: 385aa    MW: 42344.4 Da    PI: 6.2629
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G001346.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.28.3e-34201258259
                           --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           +Dgy+WrKYGqK vk+s+fprsYYrCtsa+C+vkk+vers +dp+vv++tYeg+H+h+
  HL.SW.v1.0.G001346.1 201 EDGYRWRKYGQKAVKNSPFPRSYYRCTSASCNVKKRVERSYTDPSVVVTTYEGQHTHP 258
                           8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381307.0E-9916384IPR017396PWRKY transcription factor, group IIc
Gene3DG3DSA:2.20.25.801.0E-34185260IPR003657WRKY domain
SuperFamilySSF1182902.48E-29192260IPR003657WRKY domain
PROSITE profilePS5081132.202195260IPR003657WRKY domain
SMARTSM007748.8E-40200259IPR003657WRKY domain
PfamPF031061.5E-26201258IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0009733Biological Processresponse to auxin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MEMKREMSNT TTTTTKDNNM MGSSSLSDII SNGSFPMFSS TNTFEPSSDF GAENKGSTLG  60
FMELLGVNDY FTIPPSSFFD FPALLASNTT TSTITTTAVP PLTIPKKEVS SDALNSNNNN  120
QPATPNTSSI SSASSDALNE EQTKPADPEE EEEEDEGEED EEEEQPAKTT NKQLKAKKTN  180
QKKQREPRFA FMTKSEVDHL EDGYRWRKYG QKAVKNSPFP RSYYRCTSAS CNVKKRVERS  240
YTDPSVVVTT YEGQHTHPSP LISRPTHTAA ADHPAAAFAN IPFHRSSGHH HQLPHQYQFM  300
TDHHHLLSSP SPSPSPASLP SNHNSFANYS NIISHINSNN NGSTTNAAAA FLHERRFCNP  360
SPGPALIPDH GLLQDIVTSN MRTN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-261932601077Probable WRKY transcription factor 4
2lex_A8e-261932601077Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00069PBMTransfer from AT2G47260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021654615.11e-90probable WRKY transcription factor 23 isoform X1
SwissprotO229006e-65WRK23_ARATH; WRKY transcription factor 23
TrEMBLA0A2P5B8691e-103A0A2P5B869_TREOI; WRKY domain containing protein
STRINGXP_009367202.14e-87(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100234114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.14e-46WRKY DNA-binding protein 23
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  4. Prát T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]