PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G001247.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family GRAS
Protein Properties Length: 871aa    MW: 94568.5 Da    PI: 6.5315
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G001247.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS420.31.6e-1284998582374
                  GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                            +lLl+cAeavs++++  a+++L ++sel++p g++ qR+aayf eA++arl++s+ ++y+a+p+   ++++s++ ++a+++f+ +sP+
  HL.SW.v1.0.G001247.1 499 LTLLLQCAEAVSADNFDDANKILLEISELSTPFGTSAQRVAAYFSEAMSARLVSSCLGIYAAMPSAGVPQSHSQRMASAFQVFNGISPF 587
                           579************************************************************************************** PP

                  GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179
                           +kfsh+taNqaI ea+e+eervHiiD+di+qGlQWp L++ LasRp+gpp +R+Tg+g+    s ++le+tg+rL++fA++lg+pfef 
  HL.SW.v1.0.G001247.1 588 VKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGN----SMDSLEATGKRLSDFADKLGLPFEFF 672
                           ***********************************************************....************************** PP

                  GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                           + va+++ +l++e+L+v+++Ea+aV++    h+l+d ++s ++    +L+l+++l Pkvv+vveq+++h ++sFl rf+ea++yysalf
  HL.SW.v1.0.G001247.1 673 P-VADKVGNLDPERLNVSKREAVAVHWLQ--HSLYDVTGSDTN----TLWLLQRLAPKVVTVVEQDLSH-AGSFLGRFVEAIHYYSALF 753
                           *.7*************************9..999999999999....**********************.899**************** PP

                  GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgs 357
                           dsl a++++eseer++vE++ll+rei+nv+a  g + r r  ++++Wr++l+++GF+ ++l  +aa+qa lll +++sdgy++ e++g+
  HL.SW.v1.0.G001247.1 754 DSLGASYGEESEERHVVEQQLLSREIRNVLAVGGPS-RSRDVKFHNWRDKLQQSGFRGISLAGNAATQATLLLGMFPSDGYTLVEDNGT 841
                           ***********************************9.667778********************************************** PP

                  GRAS 358 lvlgWkdrpLvsvSaWr 374
                           l lgWkd  L+++SaWr
  HL.SW.v1.0.G001247.1 842 LKLGWKDLCLLTASAWR 858
                           ****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.509472838IPR005202Transcription factor GRAS
PfamPF035145.7E-126499858IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009630Biological Processgravitropism
GO:0009956Biological Processradial pattern formation
GO:0048366Biological Processleaf development
GO:0051457Biological Processmaintenance of protein location in nucleus
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 871 aa     Download sequence    Send to blast
MVYKNREREK DKESRSHCPV PHGCYLLGYC LLNSSTYLLH HHLLLHFDNA GGDASADVTG  60
NTATTNYTIN STAHVGSSRP GSGAGGRSNS SGSSTEDLSL NQRRLQTEEQ QRQSVESGAG  120
KMVRKRMASE MEVQTATASD YLRLSRRGVP MAIGFSFPVT GDSNNNSNIN INNSNSYDII  180
PPNPNNTTPT SARPSSVSTT GMNPNYSTLI PSSTSLTNLT SGGVSGVLST TSTTCSTAPN  240
LTQIDPLHYQ HLHHNPNHNQ IRSLPQTHHQ YQSPAVCGFS GLPLFPPEST SREINTTNIC  300
INNANNNSIH NNLSPSPPAA AAGSGCRVIS PSNTTSSTTT SSMDDNNHNN HNSASATAWI  360
DGIIKDLIHS STNVSIPQLI HNVREIIYPC NPNLATLLEY RLRSCLASDP PNVAVFSPPL  420
DASPTAMNDQ YLHWGGAVLP PPPLPQSTAT NTADVIQQQP ENPSPAEEPV PAPSPAVLLR  480
EKKEELRQQK RDEEGLHLLT LLLQCAEAVS ADNFDDANKI LLEISELSTP FGTSAQRVAA  540
YFSEAMSARL VSSCLGIYAA MPSAGVPQSH SQRMASAFQV FNGISPFVKF SHFTANQAIQ  600
EAFEREERVH IIDLDIMQGL QWPGLFHILA SRPGGPPYVR LTGLGNSMDS LEATGKRLSD  660
FADKLGLPFE FFPVADKVGN LDPERLNVSK REAVAVHWLQ HSLYDVTGSD TNTLWLLQRL  720
APKVVTVVEQ DLSHAGSFLG RFVEAIHYYS ALFDSLGASY GEESEERHVV EQQLLSREIR  780
NVLAVGGPSR SRDVKFHNWR DKLQQSGFRG ISLAGNAATQ ATLLLGMFPS DGYTLVEDNG  840
TLKLGWKDLC LLTASAWRPP YHATPTTLHY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A0.04828593380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269|PubMed:16339910}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010113028.10.0protein SCARECROW
SwissprotQ2Z2E90.0SCR_IPONI; Protein SCARECROW
TrEMBLW9SCD50.0W9SCD5_9ROSA; Uncharacterized protein
STRINGXP_010113028.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein