PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G001232.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | C2H2 | ||||||||
Protein Properties | Length: 196aa MW: 22220.4 Da PI: 10.0535 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.8 | 9e-06 | 88 | 110 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H HL.SW.v1.0.G001232.1 88 FICEICNKGFQRDQNLQLHRRGH 110 89*******************88 PP | |||||||
2 | zf-C2H2 | 14.2 | 0.00013 | 165 | 187 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H + + HL.SW.v1.0.G001232.1 165 WKCEKCSKRYAVQSDWKAHSKIC 187 58*****************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 3.9E-6 | 87 | 110 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 5.82E-8 | 87 | 110 | No hit | No description |
Pfam | PF12171 | 1.8E-5 | 88 | 110 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 10.845 | 88 | 110 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.022 | 88 | 110 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 90 | 110 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 100 | 130 | 160 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.8E-5 | 153 | 186 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 5.82E-8 | 160 | 185 | No hit | No description |
SMART | SM00355 | 130 | 165 | 185 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MMKGLMVDDN MSNLTFASSG EIVSASSSST RNDQSLGTTM YPQNSSASTN QELPPPPNKK 60 KRNLPGNPDP EAEVVALSPK TLLTTNRFIC EICNKGFQRD QNLQLHRRGH NLPWKLKQRS 120 SKDVIKKKVY VCPEPSCVHH DPSRALGDLT GIKKHFFRKH GEKKWKCEKC SKRYAVQSDW 180 KAHSKICGTR EYRCDC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 9e-18 | 161 | 196 | 3 | 38 | Zinc finger protein JACKDAW |
5b3h_F | 9e-18 | 161 | 196 | 3 | 38 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010097054.1 | 1e-120 | protein indeterminate-domain 7 | ||||
Swissprot | Q8H1F5 | 3e-95 | IDD7_ARATH; Protein indeterminate-domain 7 | ||||
TrEMBL | A0A2P5FDZ7 | 1e-123 | A0A2P5FDZ7_TREOI; TFIIH C1-like domain containing protein | ||||
STRING | XP_010097054.1 | 1e-120 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF181 | 34 | 275 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G55110.1 | 1e-87 | indeterminate(ID)-domain 7 |
Publications ? help Back to Top | |||
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