PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G001167.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | LBD | ||||||||
Protein Properties | Length: 199aa MW: 21691.7 Da PI: 6.4953 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 138.9 | 1.7e-43 | 6 | 105 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +Ca+Ck+lrr+CakdCv+apyf++++p+kfa+vhk+FGasnv+k+l++lp e+r da+sslvyeA+ar+rdPvyG+vg i+ lq+q+++ HL.SW.v1.0.G001167.1 6 PCASCKLLRRRCAKDCVFAPYFASDDPHKFAIVHKVFGASNVSKMLQELPIEQRADAVSSLVYEANARMRDPVYGCVGAISYLQNQVSE 94 7**************************************************************************************** PP DUF260 90 lkaelallkee 100 l+ +la++++e HL.SW.v1.0.G001167.1 95 LQMQLAVAQAE 105 ******99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.19 | 5 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.6E-43 | 6 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MVGNSPCASC KLLRRRCAKD CVFAPYFASD DPHKFAIVHK VFGASNVSKM LQELPIEQRA 60 DAVSSLVYEA NARMRDPVYG CVGAISYLQN QVSELQMQLA VAQAEILCIQ MQQDPATMVG 120 GGVSGGGSTP PVEMDPVDQI NYFGHYDKSC FLGQNNNGLM TMSPPHHHQY HNFSSSTTSI 180 VIHDSLKRET LFGNDMVS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-45 | 3 | 107 | 8 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-45 | 3 | 107 | 8 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015877452.1 | 1e-89 | LOB domain-containing protein 12-like | ||||
Swissprot | Q8LBW3 | 5e-71 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A0A2P5ECM0 | 1e-106 | A0A2P5ECM0_TREOI; Lateral organ boundaries domain containing protein | ||||
STRING | XP_002520780.1 | 6e-89 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1664 | 34 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 2e-73 | LBD family protein |
Publications ? help Back to Top | |||
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