PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G001006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | GATA | ||||||||
Protein Properties | Length: 345aa MW: 38193.8 Da PI: 9.8314 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 60.3 | 2.5e-19 | 204 | 237 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs C+ttkTplWR+gp+g+k+LCnaCG+++rk + HL.SW.v1.0.G001006.1 204 CSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 237 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.5E-19 | 198 | 249 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 7.6E-13 | 199 | 238 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.7E-15 | 202 | 237 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 12.466 | 202 | 234 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 5.34E-14 | 203 | 235 | No hit | No description |
Pfam | PF00320 | 4.8E-17 | 204 | 237 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 204 | 229 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0010255 | Biological Process | glucose mediated signaling pathway | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MDLPSYHNNL SSPSFVELKE DHTSSSLSLS YPHHAFMNPA QDQGNFFYRS ETQRFQLQAA 60 DHNKMNVSSG GSPYDHHHHP RAEESHESFH NHHDLKFSIT TTAAVAEDHI NYDMKNHTSH 120 DENINSVKWM SSKMRMMRKM ITNSDQTASN DTPTNFTTTP QNFEPPPPLP VMKINIKHPG 180 SPPGSTDHST SSSSNNNATI IRVCSDCNTT KTPLWRSGPR GPKSLCNACG IRQRKARRAM 240 AAAAAAANGT VVPVDAPSMK NSAKAQQKEK KSRVGGGDDN RCVPFKKRCK LPSPSRGRRK 300 NKLCFEDLIV SVSKNTTAFQ RVFPQDERDA AILLMALSYG LVHG* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010090039.1 | 4e-94 | GATA transcription factor 21 | ||||
TrEMBL | A0A2P5BNR8 | 1e-119 | A0A2P5BNR8_PARAD; GATA transcription factor | ||||
STRING | XP_010090039.1 | 1e-93 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1992 | 34 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56860.1 | 2e-33 | GATA family protein |