PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G000560.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | WRKY | ||||||||
Protein Properties | Length: 244aa MW: 27884.5 Da PI: 5.0908 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 66.4 | 4.4e-21 | 42 | 96 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +DgynWrKY + ++ e+ r Y++Ct+++C+vkkkv+ s+ d+++++i+Yeg+Hnh HL.SW.v1.0.G000560.1 42 EDGYNWRKYA--VYNNGENRRLYFKCTHPNCKVKKKVDNSH-DGQITDIIYEGDHNHA 96 8********6..56788999********************9.***************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.0E-19 | 31 | 98 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 14.573 | 36 | 98 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.88E-16 | 37 | 98 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-20 | 41 | 97 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.8E-16 | 42 | 95 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.28E-5 | 193 | 219 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MAYNQSPDLS RKLIYEEYNT SIDVSERNHF EYYSSIRERI LEDGYNWRKY AVYNNGENRR 60 LYFKCTHPNC KVKKKVDNSH DGQITDIIYE GDHNHAEPQL GEDPEAKRRK NLNSTSSLSS 120 RSVGEPKIVI QIKTDEDILD DVKKHVERDS GNLIIKYEGK HNHEVPELDS ASVPTANNPE 180 QYSQQTDVEE DEAVFLGGGY NWREYGESYY KCSHPNRSCG LELSDPLSSA HGLGSSAFSL 240 GEVP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Functions with WRKY25 and WRKY33 as positive regulator of plant thermotolerance by partially participating in ethylene-response signal transduction pathway (PubMed:21336597). {ECO:0000250|UniProtKB:Q9SI37, ECO:0000269|PubMed:21336597}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (PubMed:11449049). Induced by heat stress (PubMed:21336597). {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:21336597}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q9C5T3 | 9e-24 | WRK26_ARATH; Probable WRKY transcription factor 26 | ||||
TrEMBL | A9RYE0 | 9e-28 | A9RYE0_PHYPA; Transcription factor WRKY16 (Fragment) | ||||
STRING | XP_002526700.1 | 5e-26 | (Ricinus communis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07100.2 | 2e-24 | WRKY DNA-binding protein 26 |
Publications ? help Back to Top | |||
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