PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G000560.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family WRKY
Protein Properties Length: 244aa    MW: 27884.5 Da    PI: 5.0908
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G000560.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY66.44.4e-214296259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                          +DgynWrKY   + ++ e+ r Y++Ct+++C+vkkkv+ s+ d+++++i+Yeg+Hnh 
  HL.SW.v1.0.G000560.1 42 EDGYNWRKYA--VYNNGENRRLYFKCTHPNCKVKKKVDNSH-DGQITDIIYEGDHNHA 96
                          8********6..56788999********************9.***************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-193198IPR003657WRKY domain
PROSITE profilePS5081114.5733698IPR003657WRKY domain
SuperFamilySSF1182902.88E-163798IPR003657WRKY domain
SMARTSM007741.5E-204197IPR003657WRKY domain
PfamPF031066.8E-164295IPR003657WRKY domain
SuperFamilySSF1182906.28E-5193219IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MAYNQSPDLS RKLIYEEYNT SIDVSERNHF EYYSSIRERI LEDGYNWRKY AVYNNGENRR  60
LYFKCTHPNC KVKKKVDNSH DGQITDIIYE GDHNHAEPQL GEDPEAKRRK NLNSTSSLSS  120
RSVGEPKIVI QIKTDEDILD DVKKHVERDS GNLIIKYEGK HNHEVPELDS ASVPTANNPE  180
QYSQQTDVEE DEAVFLGGGY NWREYGESYY KCSHPNRSCG LELSDPLSSA HGLGSSAFSL  240
GEVP
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Functions with WRKY25 and WRKY33 as positive regulator of plant thermotolerance by partially participating in ethylene-response signal transduction pathway (PubMed:21336597). {ECO:0000250|UniProtKB:Q9SI37, ECO:0000269|PubMed:21336597}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (PubMed:11449049). Induced by heat stress (PubMed:21336597). {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:21336597}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9C5T39e-24WRK26_ARATH; Probable WRKY transcription factor 26
TrEMBLA9RYE09e-28A9RYE0_PHYPA; Transcription factor WRKY16 (Fragment)
STRINGXP_002526700.15e-26(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07100.22e-24WRKY DNA-binding protein 26
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]