PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G000543.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | LSD | ||||||||
Protein Properties | Length: 163aa MW: 17061.8 Da PI: 8.4364 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 36.6 | 7.3e-12 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr++L YPrG+ +V+Ca+C t+ HL.SW.v1.0.G000543.1 7 CSGCRNVLLYPRGSANVCCAICSTI 31 **********************997 PP | |||||||
2 | zf-LSD1 | 49.8 | 5.4e-16 | 46 | 70 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y+rGA+sVRC++C+tV HL.SW.v1.0.G000543.1 46 CGGCRTLLMYTRGATSVRCSCCHTV 70 ************************9 PP | |||||||
3 | zf-LSD1 | 29 | 1.8e-09 | 84 | 99 | 1 | 16 |
zf-LSD1 1 CggCrtlLsYPrGAps 16 Cg+Crt+L+YP+GAps HL.SW.v1.0.G000543.1 84 CGNCRTTLMYPFGAPS 99 ***************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 6.6E-12 | 4 | 34 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 9.0E-10 | 7 | 31 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.6E-17 | 43 | 72 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.3E-13 | 46 | 70 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 4.2E-6 | 81 | 99 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.9E-7 | 84 | 100 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000303 | Biological Process | response to superoxide | ||||
GO:0001666 | Biological Process | response to hypoxia | ||||
GO:0002240 | Biological Process | response to molecule of oomycetes origin | ||||
GO:0009626 | Biological Process | plant-type hypersensitive response | ||||
GO:0009862 | Biological Process | systemic acquired resistance, salicylic acid mediated signaling pathway | ||||
GO:0010104 | Biological Process | regulation of ethylene-activated signaling pathway | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0010602 | Biological Process | regulation of 1-aminocyclopropane-1-carboxylate metabolic process | ||||
GO:0010618 | Biological Process | aerenchyma formation | ||||
GO:0043069 | Biological Process | negative regulation of programmed cell death |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MQSQLVCSGC RNVLLYPRGS ANVCCAICST ITSVPPPGME MAQLICGGCR TLLMYTRGAT 60 SVRCSCCHTV NLAPGSNQMA HVNCGNCRTT LMYPFGAPSM GNMRVPIPVH RPNGINSGTM 120 PSTSSPLPHS QSQTVVVENP MSVDESGKLV SNVVVGVTTE KK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024022803.1 | 1e-100 | protein LSD1 | ||||
Refseq | XP_024022804.1 | 1e-100 | protein LSD1 | ||||
Refseq | XP_024022805.1 | 1e-100 | protein LSD1 | ||||
Swissprot | Q2QMB3 | 4e-64 | LOL2_ORYSJ; Protein LOL2 | ||||
TrEMBL | A0A2P5FZT0 | 1e-100 | A0A2P5FZT0_TREOI; Zinc finger, LSD1-type | ||||
STRING | XP_008225697.1 | 3e-92 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4027 | 33 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.7 | 7e-63 | LSD family protein |
Publications ? help Back to Top | |||
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