PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G000440.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family bHLH
Protein Properties Length: 382aa    MW: 43082.4 Da    PI: 7.1144
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G000440.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.58.8e-12194240455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  A+ Y+k+Lq
  HL.SW.v1.0.G000440.1 194 DHIMAERKRREKLTQRFIALSAIVPGL-----KKMDKASVLGDAIMYVKQLQ 240
                           699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.9190239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-16194251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-9194240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-16194256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.24E-10195244No hitNo description
SMARTSM003531.7E-12196245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MDVASANWLS EVLGEEDYSS IFHHQYEINS LNQLGIASDD HIIGDNYKQF FSSESYSSYS  60
TITTKTNDPS ITTSSGSDSI KNSHEALNKK LSLSFSSSQL LSFDQKQFSN PPPNNSNLHH  120
HDQKVVYGNL SMSNNTTLRP KREAVPEIDM NFFNKDSLIT KKKDNYSSCE PTTFNKGTNK  180
RPYSMIKTPS HAQDHIMAER KRREKLTQRF IALSAIVPGL KKMDKASVLG DAIMYVKQLQ  240
ERVSVLEEQT KSRTVESVVF KKSQVSADDH NHQGSSSSDQ NFEGRSHHDQ DDHNQTLPEV  300
EARVSEKDVL IRIHCEKQKG IVVKILTEIE ILDHLSVVNT SVLPFGNCTL DITILAQVEK  360
EFSMTMKDLV KNLRKALLKI M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A8e-13194249863Transcription factor MYC2
5gnj_B8e-13194249863Transcription factor MYC2
5gnj_E8e-13194249863Transcription factor MYC2
5gnj_F8e-13194249863Transcription factor MYC2
5gnj_G8e-13194249863Transcription factor MYC2
5gnj_I8e-13194249863Transcription factor MYC2
5gnj_M8e-13194249863Transcription factor MYC2
5gnj_N8e-13194249863Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1198203ERKRRE
2199204RKRREK
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024027042.11e-118transcription factor bHLH18
SwissprotQ9T0727e-64BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A2P5BIT41e-166A0A2P5BIT4_PARAD; Basic helix-loop-helix transcription factor
STRINGXP_010105103.11e-114(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.15e-66bHLH family protein