PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G000105.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | WRKY | ||||||||
Protein Properties | Length: 234aa MW: 25995.2 Da PI: 8.544 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 78 | 1.1e-24 | 81 | 137 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +DgynWrKYGqK+vk+ + +rsYY+Ct+ +C++kk +e++++ ++v+e++Y+++H+h+ HL.SW.v1.0.G000105.1 81 SDGYNWRKYGQKQVKSPQGSRSYYKCTYFECCAKK-IECCDHSGHVTEVVYKSQHTHD 137 7********************************98.*********************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118290 | 3.27E-20 | 79 | 139 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.0E-21 | 79 | 139 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.6E-23 | 80 | 138 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 16.926 | 81 | 139 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.8E-17 | 82 | 137 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MVQCLDAPKE KQHQSNACRT LSELSPTSVT QSISSAPSPI LLEQRLSPPK DNDLCTPVPK 60 KRNSSDLKIV SPVPAVKIPA SDGYNWRKYG QKQVKSPQGS RSYYKCTYFE CCAKKIECCD 120 HSGHVTEVVY KSQHTHDPPK KSNNTRENKL TSAERFPGYN VAKQPCKVPK DSEPSTSAKE 180 STHETPPCSE RKRENLVNTD ENGDPKVKEE LDNEPEQKKR QVSGEVVSSI VVL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024016991.1 | 2e-92 | probable WRKY transcription factor 32 isoform X2 | ||||
Swissprot | P59583 | 3e-35 | WRK32_ARATH; Probable WRKY transcription factor 32 | ||||
TrEMBL | A0A2P5FNQ3 | 1e-114 | A0A2P5FNQ3_TREOI; WRKY domain containing protein | ||||
STRING | XP_010086863.1 | 7e-94 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5198 | 34 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30935.1 | 1e-37 | WRKY DNA-binding protein 32 |