PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

KDD76734.1

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales

Family

Protein Properties

Length: 142aa MW: 15892.8 Da PI: 4.7389

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KDD76734.1	genome	UBC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	63.2	5.4e-20	2	95	3	96
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 ++d lP a ++++++ ++Pa ++s d+ +++ +c ef+ ++++++ ++rekr ti+++ +l al +lGfe yve +++ +++r+ +++ KDD76734.1 2 DEDISLPKATLAKVIRDAMPAGMRVSGDTVDLLVHCCNEFVHVISTQSNVVSEREKRATISPEHVLRALEELGFESYVEGVTAAWHEWRDEQQQ 95 67899************************************************************************************97665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.3E-32	2	130	IPR009072	Histone-fold
SuperFamily	SSF47113	2.7E-29	3	129	IPR009072	Histone-fold
Pfam	PF00808	7.4E-13	6	70	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence Send to blast
MDEDISLPKA TLAKVIRDAM PAGMRVSGDT VDLLVHCCNE FVHVISTQSN VVSEREKRAT 60 ISPEHVLRAL EELGFESYVE GVTAAWHEWR DEQQQQSQRL GGKRGGADSG MTREQMLELQ 120 QRLFQQARDR SGPLEPGMEE AA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_B	2e-27	2	128	11	133	Transcription Regulator NC2 beta chain
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005850388.1	3e-41	hypothetical protein CHLNCDRAFT_14485, partial
TrEMBL	A0A059LRT1	1e-100	A0A059LRT1_9CHLO; Uncharacterized protein
STRING	XP_005850388.1	1e-40	(Chlorella variabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP2422	15	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23090.2	4e-36	nuclear factor Y, subunit B13