PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KDD76494.1
Organism
Helicosporidium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales
Family Whirly
Protein Properties Length: 379aa    MW: 40953.9 Da    PI: 10.0006
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KDD76494.1genomeUBCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly120.31.2e-371112482138
      Whirly   2 vyktkaalkvkavrptfealdsgn.lklkraGglllelanataerkydWekkqsfalsatevaelvd.laskesceffhdpaakgsneGkvrkalkveP 98 
                 v k+k+a+++k +rpt++   sgn + ++r+G+llle+a a aer+ydW++k++falsa e ae+++   +k+  +ffhdp + g +eG+v k+l++  
  KDD76494.1 111 VCKGKGAVTLKLIRPTWVRSGSGNgISIQRDGTLLLEFATAKAEREYDWDRKETFALSAVECAEILEaAEAKGEVSFFHDPHKMGRQEGQVTKTLRMST 209
                 679****************99998467****************************************77899************************875 PP

      Whirly  99 lpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsll 138
                    G+  f+nlsv  +  ++ ++fsvPvskae  vlr l+
  KDD76494.1 210 -GAGATCFLNLSVADKSANARHQFSVPVSKAELRVLRVLM 248
                 .568899*****************************9775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.103.8E-41100250IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544471.33E-19102248IPR009044ssDNA-binding transcriptional regulator
PfamPF085361.6E-39111246IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MQGFCGVQAL SPSPAALSGG TGPVPMLRSA VGRAVRSTGA LRGICAASRT LPVDPRDAGF  60
VGIAGSRAAV QTARAEQPSV GARAASSMAG SEEFGDPRRP LVFANYTIYK VCKGKGAVTL  120
KLIRPTWVRS GSGNGISIQR DGTLLLEFAT AKAEREYDWD RKETFALSAV ECAEILEAAE  180
AKGEVSFFHD PHKMGRQEGQ VTKTLRMSTG AGATCFLNLS VADKSANARH QFSVPVSKAE  240
LRVLRVLMEV SSEESFAHDV AYLAQRTMRR RCLHAARRTF SNLVNAEGAI VSKKKLHDEG  300
KYGGWKSAEI LFSPPQEDRL NVVGRFDWHV WHILVGLVPS AVVAGVAMWA RADMKESLNV  360
ELAYVRGKHL DLDVGLSRM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1l3a_A2e-2310024436176p24: plant transcriptional regulator PBF-2
1l3a_B2e-2310024436176p24: plant transcriptional regulator PBF-2
1l3a_C2e-2310024436176p24: plant transcriptional regulator PBF-2
1l3a_D2e-2310024436176p24: plant transcriptional regulator PBF-2
3n1h_A2e-2310224611151StWhy2
3n1i_A2e-2310224611151protein StWhy2
3n1j_A2e-2310224611151Protein StWhy2
3n1k_A2e-2310224611151protein StWhy2
3n1l_A2e-2310224611151protein StWhy2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A059LR160.0A0A059LR16_9CHLO; Whirly transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP20261516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.11e-24WHIRLY 2