PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KDD76490.1
Organism
Helicosporidium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales
Family AP2
Protein Properties Length: 200aa    MW: 22380.4 Da    PI: 10.3684
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KDD76490.1genomeUBCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.71.6e-0969110248
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48 
                 gy+GV+ +k++ r++A+I++      +k+++lg f    +Aa+ ++ 
  KDD76490.1  69 GYRGVTKHKRTRRFEAHIWHD-----KKQVYLGGFVNDVDAARSHDI 110
                 8*******************4.....5********999999999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.81E-969125IPR016177DNA-binding domain
SMARTSM003803.7E-1069132IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.7E-869126IPR001471AP2/ERF domain
PROSITE profilePS5103211.4369126IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MEDPAAIWRS VPGVGQNYET APGQAVEEPP FSAVKRFAQT LEVLFQRAPS DNACLVGWKD  60
NLAGQEERGY RGVTKHKRTR RFEAHIWHDK KQVYLGGFVN DVDAARSHDI MSLWCKGWHV  120
ASLNYAAEVY SVLKPFASLL SVADVRSCLR SCSKRQVAKD KASAPAEFGS CRKKIKARSV  180
RARQISPKRY SSNSHRSSQG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A059LQU01e-147A0A059LQU0_9CHLO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP561657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G39250.12e-10AP2 family protein