PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KDD76032.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales
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Family | NF-YC | ||||||||
Protein Properties | Length: 229aa MW: 24422.4 Da PI: 4.8237 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 26.7 | 1.2e-08 | 88 | 154 | 19 | 85 |
NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtr 85 + lP++ +kki+ d++v+++s+e +s +f+ l+ ++ a +kr+tl+ +d+ +a r KDD76032.1 88 TMLPISLVKKIMLLDPEVSRVSSEGLSAVSLVTTIFLGVLAEQAQQVATGAKRKTLRFADVRDASRR 154 679**********************************************************998665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00398 | 1.1E-4 | 1 | 75 | IPR009071 | High mobility group box domain |
PROSITE profile | PS50118 | 10.771 | 1 | 61 | IPR009071 | High mobility group box domain |
Pfam | PF00505 | 5.2E-8 | 3 | 65 | IPR009071 | High mobility group box domain |
CDD | cd01390 | 2.10E-12 | 3 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.30.10 | 2.8E-10 | 3 | 62 | IPR009071 | High mobility group box domain |
SuperFamily | SSF47095 | 1.01E-9 | 4 | 63 | IPR009071 | High mobility group box domain |
SuperFamily | SSF47113 | 4.53E-12 | 82 | 151 | IPR009072 | Histone-fold |
Pfam | PF00808 | 6.4E-9 | 89 | 150 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 2.2E-11 | 90 | 154 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MGRGPTAYFL FADHVREAVQ AEVRAANEGK ASVALVGKAI GERWKALTDD ERLKYKTSAA 60 EMAKSAAETN AETDNAEENP STSSSGPTML PISLVKKIML LDPEVSRVSS EGLSAVSLVT 120 TIFLGVLAEQ AQQVATGAKR KTLRFADVRD ASRRYSRQCD MGLYEGLVHL EKKITENQEE 180 EADEVAPAKK TTAAGAADPK GVATLRAFFA PVEGSENLAS AEENAATTD |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011400744.1 | 4e-29 | Tryptophan-tRNA ligase | ||||
TrEMBL | A0A059LNT8 | 1e-165 | A0A059LNT8_9CHLO; Uncharacterized protein | ||||
STRING | A0A087SPV3 | 2e-28 | (Auxenochlorella protothecoides) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP4674 | 11 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43250.1 | 4e-11 | nuclear factor Y, subunit C13 |