PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KDD76032.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales
Family NF-YC
Protein Properties Length: 229aa    MW: 24422.4 Da    PI: 4.8237
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KDD76032.1genomeUBCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC26.71.2e-08881541985
       NF-YC  19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtr 85 
                 + lP++ +kki+  d++v+++s+e    +s    +f+  l+ ++   a  +kr+tl+ +d+ +a  r
  KDD76032.1  88 TMLPISLVKKIMLLDPEVSRVSSEGLSAVSLVTTIFLGVLAEQAQQVATGAKRKTLRFADVRDASRR 154
                 679**********************************************************998665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003981.1E-4175IPR009071High mobility group box domain
PROSITE profilePS5011810.771161IPR009071High mobility group box domain
PfamPF005055.2E-8365IPR009071High mobility group box domain
CDDcd013902.10E-12361No hitNo description
Gene3DG3DSA:1.10.30.102.8E-10362IPR009071High mobility group box domain
SuperFamilySSF470951.01E-9463IPR009071High mobility group box domain
SuperFamilySSF471134.53E-1282151IPR009072Histone-fold
PfamPF008086.4E-989150IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.102.2E-1190154IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MGRGPTAYFL FADHVREAVQ AEVRAANEGK ASVALVGKAI GERWKALTDD ERLKYKTSAA  60
EMAKSAAETN AETDNAEENP STSSSGPTML PISLVKKIML LDPEVSRVSS EGLSAVSLVT  120
TIFLGVLAEQ AQQVATGAKR KTLRFADVRD ASRRYSRQCD MGLYEGLVHL EKKITENQEE  180
EADEVAPAKK TTAAGAADPK GVATLRAFFA PVEGSENLAS AEENAATTD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011400744.14e-29Tryptophan-tRNA ligase
TrEMBLA0A059LNT81e-165A0A059LNT8_9CHLO; Uncharacterized protein
STRINGA0A087SPV32e-28(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP46741111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.14e-11nuclear factor Y, subunit C13