PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KDD75586.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales
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Family | SBP | ||||||||
Protein Properties | Length: 156aa MW: 17755 Da PI: 7.697 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 78.3 | 1.2e-24 | 75 | 141 | 1 | 67 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLa 67 +Cq+ gC+++lse+key+rr+++C +h +++++g + fCqqC+rf +++fD++k++Crr++ KDD75586.1 75 ACQIVGCHSNLSELKEYYRRYRICPHHMGLHSIVLNGSTSCFCQQCGRFQPVEDFDDDKKTCRRKVR 141 5***************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 8.9E-23 | 70 | 137 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 20.033 | 73 | 150 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.14E-22 | 75 | 142 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 5.0E-23 | 76 | 142 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010468 | Biological Process | regulation of gene expression | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MPYVVEDVLM FSGEEYHRPW KWEDWGWDPS ALTASRDVTS KASAQDEPKS SALDAPQESV 60 NHELKKCQAV SKECACQIVG CHSNLSELKE YYRRYRICPH HMGLHSIVLN GSTSCFCQQC 120 GRFQPVEDFD DDKKTCRRKV RTGAVQTPRA SRARAA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul5_A | 3e-14 | 76 | 140 | 6 | 70 | squamosa promoter binding protein-like 7 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A059LN37 | 1e-114 | A0A059LN37_9CHLO; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP20 | 12 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69170.1 | 8e-17 | SBP family protein |