PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KDD75309.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales
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Family | NF-YC | ||||||||
Protein Properties | Length: 172aa MW: 18642.2 Da PI: 5.2549 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 136.5 | 7.6e-43 | 2 | 107 | 1 | 99 |
NF-YC 1 qlksfwekq...iek....atdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 ql+++w + +e+ + +fkn+ lPlarikki+k+dedv+mi+aeaP+l++kace+f+lelt rsw+ aee+krrt++ +d+++a++rt+ifdfl KDD75309.1 2 QLQTYWREFtreLEQcpvdSGEFKNQLLPLARIKKIMKQDEDVRMIAAEAPILFAKACEFFVLELTQRSWNVAEEQKRRTIQINDLSTAIARTEIFDFL 100 7899997654445542222689***************************************************************************** PP NF-YC 93 vdivprd 99 +d+vp KDD75309.1 101 MDVVPDP 107 ****975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.07E-27 | 20 | 100 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.3E-21 | 28 | 91 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.6E-34 | 29 | 105 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0010468 | Biological Process | regulation of gene expression | ||||
GO:0048586 | Biological Process | regulation of long-day photoperiodism, flowering | ||||
GO:0051247 | Biological Process | positive regulation of protein metabolic process | ||||
GO:2000905 | Biological Process | negative regulation of starch metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MQLQTYWREF TRELEQCPVD SGEFKNQLLP LARIKKIMKQ DEDVRMIAAE APILFAKACE 60 FFVLELTQRS WNVAEEQKRR TIQINDLSTA IARTEIFDFL MDVVPDPDKA AWSDSGGGCA 120 DPNGSCSPAA PPPGPTHTPP SPPLAGSRSP LAFSNSHAAL HKAAAGAPAG PG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 2e-39 | 12 | 105 | 5 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000250, ECO:0000269|PubMed:17322342}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_005646202.1 | 6e-44 | histone-fold-containing protein | ||||
Swissprot | Q9FMV5 | 2e-43 | NFYC4_ARATH; Nuclear transcription factor Y subunit C-4 | ||||
TrEMBL | A0A059LMQ8 | 1e-124 | A0A059LMQ8_9CHLO; Uncharacterized protein (Fragment) | ||||
STRING | XP_005646202.1 | 2e-43 | (Coccomyxa subellipsoidea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP2195 | 16 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63470.2 | 2e-42 | nuclear factor Y, subunit C4 |