PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KDD74225.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales
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Family | C2H2 | ||||||||
Protein Properties | Length: 120aa MW: 12461 Da PI: 10.0067 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 20.8 | 1e-06 | 39 | 61 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp+C+k++++ L+ H+++ H KDD74225.1 39 QCPHCDKVYKQAGRLQDHLKRqH 61 8*******************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.0063 | 38 | 61 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.533 | 38 | 66 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 40 | 61 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 120 aa Download sequence Send to blast |
MGGIKNRDAK RTQAKVFSSG GGGGTKGPAV VDKRGTEMQC PHCDKVYKQA GRLQDHLKRQ 60 HAQEEENPQA DGSRPASKPA AVDLAVPKPA AVDPAVSKPA AVDPAHSKPC VPAPTPSHPS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013902590.1 | 3e-19 | Putative ATP-dependent RNA helicase DHX57 | ||||
TrEMBL | A0A059LJE2 | 2e-80 | A0A059LJE2_9CHLO; Uncharacterized protein (Fragment) | ||||
STRING | XP_005844949.1 | 7e-17 | (Chlorella variabilis) |