PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KDD73703.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales
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Family | LSD | ||||||||
Protein Properties | Length: 66aa MW: 6939.02 Da PI: 7.3471 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 24.5 | 4.6e-08 | 1 | 19 | 7 | 25 |
zf-LSD1 7 lLsYPrGApsVRCalCdtV 25 +L Y +GA +V+CalC +V KDD73703.1 1 MLEYAFGANAVKCALCRHV 19 699***************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 2.8E-5 | 1 | 20 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 3.3E-5 | 2 | 19 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 66 aa Download sequence Send to blast |
MLEYAFGANA VKCALCRHVT PVTARGARPD AAQGAQPVLA AVLVHNPPTL DEQGREVECL 60 ALGIRT |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A059LHC7 | 3e-40 | A0A059LHC7_9CHLO; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP4613 | 11 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.8 | 4e-06 | LSD family protein |