PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KDD72805.1
Organism
Helicosporidium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales
Family AP2
Protein Properties Length: 487aa    MW: 52142.7 Da    PI: 9.3335
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KDD72805.1genomeUBCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.91.8e-11220283155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.pse...ng...kr..krfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV++++ +gr++A+ +d   +   +g   ++  ++++lg + ++ eAa+a++ a++++ g
  KDD72805.1 220 SLYRGVTRHRLTGRFEAHFWDaSHKretRGkggRTrgRQVYLGGYTSEVEAARAYDIAALAFLG 283
                 57*****************997666787557873357**********99**********99876 PP
2AP250.36.1e-16326377155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV+ +++ g+W+A+I  +  +g +k+ +lg+f +aeeAa+a+++a+ k++g
  KDD72805.1 326 SQYRGVTKHHQHGKWEARIGRV--DG-SKYLYLGTFESAEEAARAYDRAAVKFRG 377
                 78****************9885..34.7************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.02E-11220291IPR016177DNA-binding domain
CDDcd000181.85E-13220290No hitNo description
PROSITE profilePS5103216.041221291IPR001471AP2/ERF domain
PfamPF008475.9E-7221282IPR001471AP2/ERF domain
SMARTSM003808.1E-18221297IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-12221290IPR001471AP2/ERF domain
PRINTSPR003677.5E-5222233IPR001471AP2/ERF domain
PfamPF008478.2E-11326377IPR001471AP2/ERF domain
CDDcd000183.62E-24326387No hitNo description
SuperFamilySSF541712.68E-17326386IPR016177DNA-binding domain
PROSITE profilePS5103218.571327385IPR001471AP2/ERF domain
SMARTSM003802.9E-33327391IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-19327385IPR001471AP2/ERF domain
PRINTSPR003677.5E-5367387IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
SHPSKRSASG EAFNPAPAPG WQPKQLPTSS SADLSPTDVL RRNDTQQSVQ NCSAISALSD  60
APGFGERGQR GAETEVDKGS LEGSQERSRQ LEFDQTIAAQ PSEQAAALQR PEHSASVQKL  120
SHSTSVQQLS HSTAVQQLSQ PTSVQQLSQP TSVQRAPLQL QSSHVPHHQQ PSRPHARHAS  180
RAPSAEPHPP ARPLPSTRRQ HVPTKSSKAV PTGENGVFTS LYRGVTRHRL TGRFEAHFWD  240
ASHKRETRGK GGRTRGRQVY LGGYTSEVEA ARAYDIAALA FLGPQAPINY GLDEYGGAME  300
DIQGLNCDEV VSLLRRGSVG FARGASQYRG VTKHHQHGKW EARIGRVDGS KYLYLGTFES  360
AEEAARAYDR AAVKFRGRKA ITNFKITDYA DVLAGAQEEQ DRLASGVEAG MDMGLGLQSG  420
NLPLSLGSGS VYASQPLLLD KQTAPAYGLH PPASLAAAYS AQELACGFPA PLQLLGFAPS  480
GAEGGSQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A059LFB70.0A0A059LFB7_9CHLO; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP561657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.17e-56AP2 family protein