PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KDD72107.1
Organism
Helicosporidium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales
Family AP2
Protein Properties Length: 354aa    MW: 38921.2 Da    PI: 9.9424
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KDD72107.1genomeUBCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.64.1e-15657154
         AP2  1 sgykGVrwdkkrgrWvAeIrdpseng..krkrfslgkfgtaeeAakaaiaarkkle 54
                s+y+GV++d+k+g+W+++I++        +  +s+g+++t+  Aa+a+++a+  l 
  KDD72107.1  6 SQYRGVSYDRKKGKWRVQIKV----AalGKSGVSVGYYDTELAAARAYDRAAIGLL 57
                78*******************....44446**********99*********98766 PP
2AP225.53.2e-08113162155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s++ GV    ++++W A+I +       k  +lg+++ +e Aa+ +++ +++l+g
  KDD72107.1 113 SRFMGVGSSNRKNQWQARILVH-----GKVTHLGYYDGEEAAARVYDRVALALHG 162
                 678899777789*********4.....4*************************99 PP
3AP225.92.6e-08203245150
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaar 50 
                 s+++GV+ +k +grW+A +++      r+  + + f+++eeAa+a++aa 
  KDD72107.1 203 SRFRGVS-RK-KGRWEAKVMVN-----RRWAYRELFDSEEEAARAYDAAL 245
                 789***9.56.6******9993.....5888999**************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.5E-10654IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-10668IPR016177DNA-binding domain
SMARTSM003805.7E-7775IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-11769IPR001471AP2/ERF domain
PROSITE profilePS5103214.328769IPR001471AP2/ERF domain
SMARTSM003806.1E-5114176IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-12114171IPR016177DNA-binding domain
PROSITE profilePS5103211.733114170IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-8115170IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-8203260IPR016177DNA-binding domain
SMARTSM003803.9E-4204266IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.1E-7204260IPR001471AP2/ERF domain
PROSITE profilePS5103212.839204260IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
GGGTKSQYRG VSYDRKKGKW RVQIKVAALG KSGVSVGYYD TELAAARAYD RAAIGLLGRG  60
HSNLQTNFEL DDYAGESIPR LTGKTREEVK STLKSERLRV APRRRFSSRA RTSRFMGVGS  120
SNRKNQWQAR ILVHGKVTHL GYYDGEEAAA RVYDRVALAL HGPGAQTNFG ADQYSAEELA  180
PFADLDRESL QRALGVKPMD KSSRFRGVSR KKGRWEAKVM VNRRWAYREL FDSEEEAARA  240
YDAALWRLKP RDALSYANFK DQLPFGAQGV DGLPAPPADD DDDEEDELDE DGYASDATDA  300
SGRHRRFGAQ SGAGGTRASA RAMGRRVESA PNLHAFTDLV VGQNPGPAIN SLAS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011401790.11e-138AP2-like ethylene-responsive transcription factor TOE3
TrEMBLA0A059LCQ70.0A0A059LCQ7_9CHLO; Uncharacterized protein (Fragment)
STRINGA0A087SSP11e-138(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP624466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.16e-14AP2 family protein