PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KDD71320.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales
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Family | C3H | ||||||||
Protein Properties | Length: 74aa MW: 8510.64 Da PI: 7.4089 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.5 | 3.6e-06 | 26 | 45 | 6 | 26 |
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C +f++ G C +G C+F+H+ KDD71320.1 26 CFDFLK-GLCTRGLLCRFSHD 45 778999.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 8.662 | 1 | 13 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.582 | 20 | 47 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0028 | 21 | 46 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-5 | 22 | 50 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.8E-4 | 25 | 52 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 74 aa Download sequence Send to blast |
MRGDHCRYSH SVEYIISVNS QEKGICFDFL KGLCTRGLLC RFSHDLSNLQ APEVQESADG 60 RHRFAPICYD FVKN |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011402353.1 | 1e-36 | Zinc finger CCCH domain-containing protein 7 | ||||
TrEMBL | A0A059LB21 | 1e-48 | A0A059LB21_9CHLO; Uncharacterized protein (Fragment) | ||||
STRING | A0A087SU96 | 5e-36 | (Auxenochlorella protothecoides) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP3507 | 13 | 14 |