PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han008951
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family BBR-BPC
Protein Properties Length: 308aa    MW: 34833.3 Da    PI: 9.7728
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S59508868PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind323.46.7e-9913081301
  GAGA_bind   1 mdddgsre..rnkg.yye...............paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkll 82 
                mdd g+re  r++  yy+               +++++   ++ ++m +++erd++i+er+ al ekkaa+ erdma +qrd+a+a+rn+a+ erdn+++
  Han008951   1 MDDAGHREngRHRIdYYKgvhpqwnvmpqyqmkDQNAMM--MNRKIMHIVSERDTAIEERDRALLEKKAALEERDMAIQQRDTAIADRNDAIRERDNAIA 98 
                99***99999999989*9********9766543223444..899******************************************************** PP

  GAGA_bind  83 alllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkes 182
                al ++e++++s+l       +g ++ + ++++    ++++ +e+     +  +p+++  + +ke k +  +  + +  ++++kk+kk +e+ +++v++++
  Han008951  99 ALRFQETTMNSHLQR----KRGHHNHH-HHTQPSYMMDPHVTEALPITAVPGEPVHK-SKITKEIKPRGGSGGGGSGSSSRSKKQKKVGEDLNRNVTTDG 192
                *******98887733....33333333.33323344555555566666666667665.455566666666667778888999999999999999999988 PP

  GAGA_bind 183 aderskaekksidl.vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsn 281
                    skae++ +++  ++++s+Dest+P+P+CsCtG+ rqCYkWG+GGWqS+CCttt+SvyPLP+++++r++R++grKmS+ +f++l+ +La++G+dls 
  Han008951 193 ----SKAEWDAQEFgLMDQISFDESTMPIPICSCTGVARQCYKWGSGGWQSSCCTTTLSVYPLPQMPNKRHSRMGGRKMSGTVFTRLIGRLASQGHDLSA 288
                ....89********4469********************************************************************************** PP

  GAGA_bind 282 pvDLkdhWAkHGtnkfvtir 301
                pvDLk++WA HGtn+++ti+
  Han008951 289 PVDLKNYWANHGTNRYITIK 308
                *******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012261.4E-1251308IPR010409GAGA-binding transcriptional activator
PfamPF062173.3E-911308IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MDDAGHRENG RHRIDYYKGV HPQWNVMPQY QMKDQNAMMM NRKIMHIVSE RDTAIEERDR  60
ALLEKKAALE ERDMAIQQRD TAIADRNDAI RERDNAIAAL RFQETTMNSH LQRKRGHHNH  120
HHHTQPSYMM DPHVTEALPI TAVPGEPVHK SKITKEIKPR GGSGGGGSGS SSRSKKQKKV  180
GEDLNRNVTT DGSKAEWDAQ EFGLMDQISF DESTMPIPIC SCTGVARQCY KWGSGGWQSS  240
CCTTTLSVYP LPQMPNKRHS RMGGRKMSGT VFTRLIGRLA SQGHDLSAPV DLKNYWANHG  300
TNRYITIK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal and petal vasculature, in anthers, in young rosette, in the lateral and primary roots, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022020462.10.0protein BASIC PENTACYSTEINE4-like
RefseqXP_022020463.10.0protein BASIC PENTACYSTEINE4-like
SwissprotQ8S8C61e-113BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBLH1ZN800.0H1ZN80_HELAN; GAGA-binding transcriptional activator
STRINGXP_009804621.11e-136(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.21e-115basic pentacysteine 4