PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Han008714 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | GRF | ||||||||
Protein Properties | Length: 201aa MW: 22582.5 Da PI: 10.5392 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 73.5 | 2.4e-23 | 89 | 133 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+ep+rCrRtDGKkWRC ++v +++k+CErH + rsrsrk++e+ Han008714 89 DPEPWRCRRTDGKKWRCAKDVAPDQKYCERHAYKIRSRSRKPVET 133 79****************************************997 PP | |||||||
2 | QLQ | 38.3 | 4.1e-14 | 38 | 71 | 2 | 35 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqai 35 FTa+Q+++L++Q +y y++a PvPp+Ll ++ Han008714 38 LFTATQWEELERQKKIYMYIMACIPVPPQLLSPL 71 5******************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 4.9E-5 | 37 | 73 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 14.766 | 38 | 73 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 2.9E-8 | 39 | 71 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 23.89 | 89 | 133 | IPR014977 | WRC domain |
Pfam | PF08879 | 5.3E-20 | 90 | 132 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MGDGNGARVT NCDVGLGINF VSSCKKNGGV MGVSGKVLFT ATQWEELERQ KKIYMYIMAC 60 IPVPPQLLSP LSVQSNRVST GLKFSNGSDP EPWRCRRTDG KKWRCAKDVA PDQKYCERHA 120 YKIRSRSRKP VETQSQNLTI SAAHQQTRFM KNSSIPVSXS NNNQFQLPLQ SSSVGSRNDH 180 ISKQISREFN PQISTRRDII I |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022002024.1 | 1e-133 | growth-regulating factor 8-like | ||||
TrEMBL | A0A251SVP9 | 1e-132 | A0A251SVP9_HELAN; Putative WRC domain, Glutamine-Leucine-Glutamine, QLQ, Growth-regulating factor | ||||
STRING | VIT_02s0025g02680.t01 | 2e-44 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37740.1 | 1e-28 | growth-regulating factor 2 |