PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Han008056 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | B3 | ||||||||
Protein Properties | Length: 157aa MW: 17798.3 Da PI: 9.1559 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 38.8 | 1.7e-12 | 37 | 124 | 2 | 92 |
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkldgrsefel 92 vl +s+ k+ r+ +p +f e+ + + +++ g++W++ +i ++++ + l+ + W +Fv +n+L++gD +vF+l++ ++ + Han008056 37 YVVLRKSHIEKTFRMHFPSSFSEKLpvA---KIPAKIV---YGGKVWDLLYIGNQGPTNCRLEnQAWGKFVAENKLEVGDACVFELMEGRSNST 124 567889999*************999532...3555566...689*******99999998777659********************985544333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 9.22E-16 | 32 | 120 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.7E-14 | 32 | 127 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.36E-18 | 34 | 134 | No hit | No description |
PROSITE profile | PS50863 | 10.32 | 36 | 136 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.9E-6 | 36 | 136 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.1E-11 | 36 | 126 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MDPPPSTSNH RKQKPAAQND GERDSNVWPL SGKPYFYVVL RKSHIEKTFR MHFPSSFSEK 60 LPVAKIPAKI VYGGKVWDLL YIGNQGPTNC RLENQAWGKF VAENKLEVGD ACVFELMEGR 120 SNSTSIKLRL QILKDEFPTE LKDKAEGFKS NNPICID |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022001841.1 | 1e-115 | B3 domain-containing protein Os04g0386900 | ||||
TrEMBL | A0A251SUU1 | 1e-113 | A0A251SUU1_HELAN; Putative DNA-binding pseudobarrel domain-containing protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49480.1 | 1e-10 | related to vernalization1 1 |