PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Han007660 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | E2F/DP | ||||||||
Protein Properties | Length: 186aa MW: 20182.2 Da PI: 8.4479 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 82.6 | 3.3e-26 | 88 | 168 | 3 | 70 |
E2F_TDP 3 eksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwk 70 +++Lr++++k ++ek+e+ g++t+neva+eLv+e d+kn+rRR+YD+lNVL+ +++i+k +k+ei+w+ Han007660 88 GRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfsdpgdgdqapdqkqyDEKNIRRRVYDALNVLMPMDIISK-DKKEIQWR 168 689*******...*****999*******************************************************.*******7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 5.2E-44 | 82 | 174 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 1.2E-32 | 86 | 169 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 5.1E-24 | 89 | 168 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 3.26E-19 | 89 | 168 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MGSNDSLENA AANINPFAGG SRAPTRSTVS GQSVSTSGSA GSPSTRSDNT FLRLNHVDVV 60 GDDDAGSQGV AGKKKKRAQR ATGGDKGGRG LRQFSMKVCE KVESKGRTTY NEVADELVAE 120 FSDPGDGDQA PDQKQYDEKN IRRRVYDALN VLMPMDIISK DKKEIQWRSL PRTSLNDIEE 180 TKSERL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_B | 1e-38 | 80 | 174 | 1 | 93 | PROTEIN (TRANSCRIPTION FACTOR DP-2) |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during the whole cell cycle. {ECO:0000269|PubMed:11669580}. | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16920782}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022024076.1 | 1e-129 | transcription factor-like protein DPB | ||||
Swissprot | Q9FNY2 | 7e-80 | DPB_ARATH; Transcription factor-like protein DPB | ||||
TrEMBL | A0A251VH55 | 1e-128 | A0A251VH55_HELAN; Putative winged helix-turn-helix DNA-binding domain, Transcription factor DP | ||||
STRING | GLYMA11G01270.1 | 3e-85 | (Glycine max) | ||||
STRING | XP_010050871.1 | 7e-85 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03415.1 | 5e-72 | Transcription factor DP |